cluster # 1909

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Oryza sativa
cluster # 1909 cluster # 1909 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1909#0 length = 446 sequences # 1

consensus_1909#1 length = 262 sequences # 1

consensusID : consensus_1909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA]

[+] EMBL C98913               [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA]




>consensus_1909#0
CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCT
CCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCG
ATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATC
GTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGC
AATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT
GCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA
TGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNA
TTTTTGGGTCAAAAAAAAAAAAAAAA

consensusID : consensus_1909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA]

[-] EMBL CA761577             [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA]




>consensus_1909#1
GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTC
TCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATG
CACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATG
TGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGC
ATTTTTGGGTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1909#0      CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCT 60
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      CCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCG 120
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      ATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATC 180
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      GTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGC 240
consensus_1909#1      -------------------GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGC 41
                                           *   *     ******* ******** ******** ***

consensus_1909#0      AATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 300
consensus_1909#1      AATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 101
                      ************************ ***********************************

consensus_1909#0      GCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 360
consensus_1909#1      GCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 161
                      *** ***************** **************************************

consensus_1909#0      TGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAA------------------ 402
consensus_1909#1      TGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTG 221
                      *************************** **************                  

consensus_1909#0      --GAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA 446
consensus_1909#1      CTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA----- 262
                        **************** **********************