These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA] [+] EMBL C98913 [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA] consensusID : consensus_1909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA] [-] EMBL CA761577 [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1909#0 CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCT 60 consensus_1909#1 ------------------------------------------------------------ consensus_1909#0 CCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCG 120 consensus_1909#1 ------------------------------------------------------------ consensus_1909#0 ATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATC 180 consensus_1909#1 ------------------------------------------------------------ consensus_1909#0 GTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGC 240 consensus_1909#1 -------------------GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGC 41 * * ******* ******** ******** *** consensus_1909#0 AATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 300 consensus_1909#1 AATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 101 ************************ *********************************** consensus_1909#0 GCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 360 consensus_1909#1 GCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 161 *** ***************** ************************************** consensus_1909#0 TGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAA------------------ 402 consensus_1909#1 TGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTG 221 *************************** ************** consensus_1909#0 --GAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA 446 consensus_1909#1 CTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA----- 262 **************** ********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||