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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1909 cluster # 1909       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1909#0 length = 446 sequences # 1  
consensus_1909#1 length = 262 sequences # 1  

consensusID : consensus_1909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA]

[+] EMBL C98913               [CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCTCCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCGATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATCGTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGCAATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA]


>consensus_1909#0 CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCT CCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCG ATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATC GTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGC AATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT GCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA TGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAAGAAGACATGAAAGCGGNA TTTTTGGGTCAAAAAAAAAAAAAAAA



consensusID : consensus_1909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence
                              [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA]

[-] EMBL CA761577             [GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA]


>consensus_1909#1 GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGCAATGCCTTCCTCTTTTTTC TCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAATGCAGTTACAAGTATAAATG CACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAATGTGTACAAAGAGGAAATG TGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTGCTGAAGACATGAAAGCGGC ATTTTTGGGTCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1909#0      CCAGTACATTCCCCACCACCACCCGTCTTATCCCCACCGCCACCAGTCGTCCCATCGCCT 60
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      CCGCCACCGGCACCATCGTTGCCTCCTCCAGCCCCTGAGGAGCTAATCATTCTACCGCCG 120
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      ATCTTAAGTCACTCCTATGCATCACCGCCGCCGCCCCAATTTGAAGGATATTAAGTTATC 180
consensus_1909#1      ------------------------------------------------------------
                                                                                  

consensus_1909#0      GTGACAACACCGGCGGCACATCCATGACAACGACAAGGTGCAGCAGCNGTGATCATTAGC 240
consensus_1909#1      -------------------GCCAGAGGACGAGACAAGGGGCAGCAGCAGTGATCATCAGC 41
                                           *   *     ******* ******** ******** ***

consensus_1909#0      AATGCCTTCCTCTTTTTTCTCACANTCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 300
consensus_1909#1      AATGCCTTCCTCTTTTTTCTCACAATCTCACGTACTCCCATGAAAGAAAGAGTACAAAAT 101
                      ************************ ***********************************

consensus_1909#0      GCATTTACAAGTATAAATGCATGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 360
consensus_1909#1      GCAGTTACAAGTATAAATGCACGTATATATGTGTACCCTGGAGAAGAGGAGTGTGTGCAA 161
                      *** ***************** **************************************

consensus_1909#0      TGTGTACAAAGAGGAAATGTGGTTAACACGATGTAATTGTAA------------------ 402
consensus_1909#1      TGTGTACAAAGAGGAAATGTGGTTAACCCGATGTAATTGTAACATCATTCCAAAATTTTG 221
                      *************************** **************                  

consensus_1909#0      --GAAGACATGAAAGCGGNATTTTTGGGTCAAAAAAAAAAAAAAAA 446
consensus_1909#1      CTGAAGACATGAAAGCGGCATTTTTGGGTCAAAAAAAAAAA----- 262
                        **************** **********************     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)