These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1523 fasta sequence [GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCTCGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCTGTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACCACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCTTCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCCCCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCCTGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGGGTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCAGGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTAACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAGTTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCATATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACCTCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGGTCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCATTGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTGCTTGAGTTAATTAATGAATTATCATCCAAAGCATAACTTGTAGTGAACTTATTTGCTACAAAGTGTTATATTGTTCCATTTAGCTATTGAAGTTAAATTGTTCTTATTTATATATTGCAGTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGATTTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTTAGATTAGGTATCACAATGTATCCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTTTTGAAATATTGCTATGTTGTGCAATAATATA] [+] EMBL AK070668 [GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCTCGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCTGTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACCACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCTTCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCCCCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCCTGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGGGTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCAGGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTAACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAGTTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCATATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACCTCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGGTCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCATTGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTGCTTGAGTTAATTAATGAATTATCATCCAAAGCATAACTTGTAGTGAACTTATTTGCTACAAAGTGTTATATTGTTCCATTTAGCTATTGAAGTTAAATTGTTCTTATTTATATATTGCAGTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGATTTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTTAGATTAGGTATCACAATGTATCCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTTTTGAAATATTGCTATGTTGTGCAATAATATA] consensusID : consensus_1922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [GTTAGGAAACTCATTAGCCCCGGGNTTACCNCCTTTTATCCTTGTTAAATGCCACTCCAGTTTCTCCAACAATAATCTATCAATTGNGCTCNGTATGCTTGGAGTTAAATTAATGAATATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTACCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATCGCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAATTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTATCCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA] [+] EMBL BM037924 [GTTAGGAAACTCATTAGCCCCGGGNTTACCNCCTTTTATCCTTGTTAAATGCCACTCCAGTTTCTCCAACAATAATCTATCAATTGNGCTCNGTATGCTTGGAGTTAAATTAATGAATATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTACCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATCGCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAATTCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGGTAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCTCAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCAGTGGTAGGATTTATGATGAAATGGATGAGGAAGGTCAGTCGAAGACATATTGAAGGGTTGTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTTTTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTATCCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1922#0 GATCCGATAATCTCGCCCCCCATCTTCTTGTATTCCCCTCGCTCCTGCTGCCGCTCACCT 60 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 CGGCCGCCGGCGTGATGCTACTGGCGCAACCATCGGATCCCTGCGCACGAGCTCCGGCCT 120 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 GTCGCTCCCACCACCCGTGACCTCCATTGCTGCCAACGTTGGCCGTGCGCTCTCACCACC 180 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 ACCATCTCCAGATCCTTGCCGAAGTGCTCCCGCCACCACAACCCCAACGGCGGTGGTTCT 240 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TCCCCAAGTTCTCACCGGGCACACGAGGGAGGAAGGAGGCTTGATTTGGTGCCCCCACCC 300 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 CCCTTTGCAAAAATCAGGAGGTTGAGAGCTGATTAGTGATTGCTCGCTGGAGGTGCTGCC 360 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TGGGGGCTACATCGAGCAAAAGGGTCACAACAGGAAGTGTGCATGACTACAGGTAACCGG 420 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 GTAACTGGGAATGAATTGATGCCATCAGTTAAGCAGGCTCAATGTTTGATGTGAAATTCA 480 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 GGGACAGCTTCACTCTTCGTGGTCCTATAATCTTTATCAGGATTGGAATTTTGGAACTTA 540 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 ACTATAGGATTAATCATTGTGTTGGTAAATGTGTCGCCGTGTATTAAATTTCTCTTTCAG 600 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TTTTTAGATCAAGAATTCGCTCTTTGATCAACTGTTACTGAATTATAATACAATTGGGCA 660 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TATGTGTAGGAACTTTGCAACGTTTATGTGTTGATAATTATGCTGCCCCCATTCATGACC 720 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TCATCCCTAGTCCCCCATGAAGACTCTACCAGGAACAAAATTCAGGATGATGCCTCCTGG 780 consensus_1922#1 ------------------------------------------------------------ consensus_1922#0 TCCGAACAGTTTAGGGAAAACTCAATAGAGCCAGAGGATCTACACAAGCCTTCTATTCAT 840 consensus_1922#1 ---------GTTAGG--AAACTCATTAGCCCC---GGGNTTAC---CNCCTTTTATCC-T 42 ***** ******* *** ** ** *** **** *** * * consensus_1922#0 TGTTTTAAATTGCCATCAGTTTCATCAAACATAATTCTATCTAATTTGTGCTCTGTATTG 900 consensus_1922#1 TGTTAAATGCCACT-CCAGTTTCTCCAACAATAAT-CTATCAA--TTGNGCTCNGTATGC 98 **** * * ******* *** ***** ***** * *** **** **** consensus_1922#0 CTTGAGTTAA-TTAATGAATTATCATCC-AAAGCATAACTTGTAGTGAACTTATTTGCTA 958 consensus_1922#1 TTGGAGTTAAATTAATGAAT-ATCATCCCAAACCATAACTTGTAGNGAACTTATTTGCTA 157 * ******* ********* ******* *** ************ ************** consensus_1922#0 CAAAGTGTTATATTG-TTCCATTTA-GCTATTGAAGTTAAATTGTTCTTATTTATATATT 1016 consensus_1922#1 CCAAGTGTTATATTGGTNCCATTTNAGCTATTGAAGTTAAATTGTTCTTATTTATATATC 217 * ************* * ****** ********************************* consensus_1922#0 GCA-GTCGAATATTGTTTAAGAAATAAATACTAAGTTTGCAAAACTTATCAATTGAT--T 1073 consensus_1922#1 GCACGTCGAATATTGTTTAAGAAATAAATACTAAGTTTCCCAAACTTATCCATTGATAAT 277 *** ********************************** * ********* ****** * consensus_1922#0 TCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGG 1133 consensus_1922#1 TCTAGACTGTAACTGTACTAAAGTATTTTGCTTCTCAGTATCCTTCTTTTTATATTTAGG 337 ************************************************************ consensus_1922#0 TAACTGAACTAACATATATTAGGTTATCAGAACAACATCACTGGAGGTAAATTTTGCTCT 1193 consensus_1922#1 TAACTGAACTAACATATATTAGGTTATCAGAACAACACCNCTGGAGGTAAATTTTGCTCT 397 ************************************* * ******************** consensus_1922#0 CAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCA 1253 consensus_1922#1 CAAATAAGTTATATATTACATGCCAAATATAATGTATATTAACTAGTATAATCCTTGCCA 457 ************************************************************ consensus_1922#0 GTGGTAGGATTTATGATGAAATGGATGAGGAAGGTGCAGTCGAAGACATATTGAAGGGTT 1313 consensus_1922#1 GTGGTAGGATTTATGATGAAATGGATGAGGAAGGT-CAGTCGAAGACATATTGAAGGGTT 516 *********************************** ************************ consensus_1922#0 GTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTT 1373 consensus_1922#1 GTTTCTCTATATAATGATTAGCGGTTCTATCCATAAGACCTCCAGATCGAAGAATATTTT 576 ************************************************************ consensus_1922#0 TTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGT-TAGATTAGGTATCACAATGTAT 1432 consensus_1922#1 TTTGTCATATGTAACATTGAAGCTCGGGTGTCCCAGTGTAGATTAGGTATCACCATGTAT 636 ************************************* *************** ****** consensus_1922#0 CCCTGAATATTTTATTACAATCGATTCAAGAATGATATCATTATTCTTGTACTGATTGTT 1492 consensus_1922#1 CCCTGAATATTTTATTACCATCGATTCAAGAATGATATCATTATTCTTGTAAAAAAAAAA 696 ****************** ******************************** * consensus_1922#0 TTGAAATATTGCTATGTTGTGCAATAATATA 1523 consensus_1922#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||