cluster # 1924

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Oryza sativa
cluster # 1924 cluster # 1924 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1924#0 length = 343 sequences # 1

consensus_1924#1 length = 162 sequences # 1

consensusID : consensus_1924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTGATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATTAAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCTTCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTGCTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACCCCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA]

[+] EMBL CA756088             [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACTGATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATTAAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCTTCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTGCTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACCCCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA]




>consensus_1924#0
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACT
GATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATT
AAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCT
TCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTG
CTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACC
CCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA

consensusID : consensus_1924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [TCGGTCAGCCGCTTGCTGTCGTCGTCCAGCCAGCGCGCGTACTCCATGTCGAACATGGCCGCGCCAGAACTCATGTCGCCTGCTGCTCTGCACCCCCCAAGAAACAGGCCCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTGCTGAAGCCTGACCCTG]

[+] EMBL CB643023             [TCGGTCAGCCGCTTGCTGTCGTCGTCCAGCCAGCGCGCGTACTCCATGTCGAACATGGCCGCGCCAGAACTCATGTCGCCTGCTGCTCTGCACCCCCCAAGAAACAGGCCCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTGCTGAAGCCTGACCCTG]




>consensus_1924#1
TCGGTCAGCCGCTTGCTGTCGTCGTCCAGCCAGCGCGCGTACTCCATGTCGAACATGGCC
GCGCCAGAACTCATGTCGCCTGCTGCTCTGCACCCCCCAAGAAACAGGCCCTGTGACCGT
GCTCTTTGGAGTTCTTGCTCGATCTGCTGAAGCCTGACCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1924#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACT 60
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      GATCTACACCCCCCGAGAGACAGGCCCTGACGATCACTCACGCAGTGCGGGTACCATATT 120
consensus_1924#1      -----------------------------TCGGTCAGCCGCTTGCTGTCGTCGTC-CAGC 30
                                                    ** ***  * *    **  *    *  *  

consensus_1924#0      AAATTCCTGCTAATTTATTTCATTTCTGGATAGTAGAAAAAAATAGTACTAGTACTAGCT 180
consensus_1924#1      CAGCGCGCG-TACTCCATGTCGAACATGGCC-GCGCCAGAACTCATGTCGCCTGCTGCTC 88
                       *   *  * ** *  ** **     ***   *    * **   *   *   * **    

consensus_1924#0      TCTTATATTCAGAATGCGTGTTACCTGTGACCGCGCTCTTTGGAGCTCTTGCTCGATCTG 240
consensus_1924#1      TGCACCCCCCAAGAAACAGGC--CCTGTGACCGTGCTCTTTGGAGTTCTTGCTCGATCTG 146
                      *        **  *  *  *   ********** *********** **************

consensus_1924#0      CTGAAGTCTGACCCTGCTGGTCTCTAGGTTTTGCACATAAGCCTGCGAGAAAAACACACC 300
consensus_1924#1      CTGAAGCCTGACCCTG-------------------------------------------- 162
                      ****** *********                                            

consensus_1924#0      CCGCTCGCAACGCAGTCTTTTTGACTATCAAAAAAAAAACAAA 343
consensus_1924#1      -------------------------------------------