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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC]
[+] EMBL AK062836 [ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC]
consensusID : consensus_1927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA]
[+] EMBL BE039654 [CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1927#0 ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTG 60
consensus_1927#1 ------------------------------------------------------------
consensus_1927#0 GTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCC 120
consensus_1927#1 ------------------------------------------------------------
consensus_1927#0 GCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTC 180
consensus_1927#1 ----------------------------------------CCGGCGCCGCCGCCGTCCTC 20
*** ****************
consensus_1927#0 CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 240
consensus_1927#1 CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 80
************************************************************
consensus_1927#0 GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 300
consensus_1927#1 GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 140
************************************************************
consensus_1927#0 CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 360
consensus_1927#1 CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 200
************************************************************
consensus_1927#0 GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 420
consensus_1927#1 GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 260
************************************************************
consensus_1927#0 GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 480
consensus_1927#1 GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 320
************************************************************
consensus_1927#0 TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 540
consensus_1927#1 TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 380
************************************************************
consensus_1927#0 AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 600
consensus_1927#1 AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 440
************************************************************
consensus_1927#0 AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 660
consensus_1927#1 AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 500
************************************************************
consensus_1927#0 TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 720
consensus_1927#1 TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 560
************************************************************
consensus_1927#0 GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTG 780
consensus_1927#1 GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA------------ 608
************************************** * *
consensus_1927#0 CTCGCCATGGCTATTTTGCAGC 802
consensus_1927#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||