cluster # 193

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Oryza sativa
cluster # 193 cluster # 193 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_193#0 length = 1022 sequences # 1

consensus_193#1 length = 443 sequences # 1

consensusID : consensus_193#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1022
fasta sequence

                              [TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCCTCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTTGAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCTTGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTTCTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTAACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTTGCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAATCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCCACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGTTCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTGAGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATGCAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTCCAT]

[+] EMBL AK073062             [TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCCTCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTTGAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCTTGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTTCTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTAACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTTGCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAATCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCCACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGTTCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTGAGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATGCAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTCCAT]




>consensus_193#0
TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCC
TCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTT
GAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCT
TGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTT
CTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTA
ACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGT
GCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTT
TGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGC
ACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAG
GAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTGTCAATGACATCAA
CAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTTG
CAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAAT
CATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCCA
CGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGTT
CTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTGA
GTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATGC
AATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTCC
AT

consensusID : consensus_193#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [GTGGCACATTTGGTGAGGCTTCGGGAGGTCACCAGAATTGTTNCTGTTCACACGGGCTGCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAATAAGAGGTTGCTTCAGACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGACA]

[+] EMBL OSS13536A            [GTGGCACATTTGGTGAGGCTTCGGGAGGTCACCAGAATTGTTNCTGTTCACACGGGCTGCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAATAAGAGGTTGCTTCAGACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCAACAATGATTCGAATATCCTTCCGGGACA]




>consensus_193#1
GTGGCACATTTGGTGAGGCTTCGGGAGGTCACCAGAATTGTTNCTGTTCACACGGGCTGC
TAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAATAAGAGGT
TGCTTCAGACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGTGCGTT
GTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTTTGTCA
CCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGCACAAA
GCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAGGAATT
CAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCAACAAT
GATTCGAATATCCTTCCGGGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_193#0      TTGTTTGTTTAAGCTGTATGTGCCACACTTTCTTATTCCTGAAAAGAAGATTGGTTTCCC 60
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      TCTTCAACTTCATACTCCGATGTTCTTGCCCCTCTATAGCTCATTAAAAAGTTAGTAGTT 120
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      GAGTTCATCTCAGCTGCTCTTCTTCTGGTTCTTTTATCTTTTGTTTTTTTGGTGGTTCCT 180
consensus_193#1      ---------------------------------------------------GTGGCACAT 9
                                                                        ****  * *

consensus_193#0      TGCAAGTGCTTTTTCTCGAGGAATGTCCCTTTTGGTTCTGTTGCCTGTTGGACCTCAGTT 240
consensus_193#1      TTGGTGAGGCTTC------GGGAGGTCACC---AGAATTGTTNC-TGTTC-ACACGGGCT 58
                     *    * *  **       ** * *** *     *   **** * ****  **    * *

consensus_193#0      CTTATTTATTTAATGATTTGTGCTCCTCTGTAACCTGGTGTTCTCGCTTTCTAATCTGTA 300
consensus_193#1      GCTAGTTCTTCACAGCTATCTCGTGTCATCCGAGCAGAAGCAACTACCTACCAAT--AAG 116
                       ** ** ** *  * * * *  *    *   * * *  *      * * * ***     

consensus_193#0      ACGCTATACCTGTGCTTAACAGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGT 360
consensus_193#1      AGGTTGCTTCAG-ACCCAAATGGCATCGTCAGGAATTTTTCCTCGGTTATTCCAGCATGT 175
                     * * *    * *  *  **  ***************************************

consensus_193#0      GCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTT 420
consensus_193#1      GCGTTGTTACGTTGAAGGATGAATTCCAAAAGAGCACTACATTAATCCTCTAGGTCACTT 235
                     ************************************************************

consensus_193#0      TGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGC 480
consensus_193#1      TGTCACCATGAAGTTCATTTTCTATCTGTTCAGTATTTTCTGTTGTCTGTGTTCCTGCGC 295
                     ************************************************************

consensus_193#0      ACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAG 540
consensus_193#1      ACAAAGCCAAAACATCTCTGGGAGGCCCGATGCAGTGAGAATTGGAGCTCAGTTCGCAAG 355
                     ************************************************************

consensus_193#0      GAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCT-GTCAATGACATCA 599
consensus_193#1      GAATTCAACAATTGGGAGAGTTGCCGCAGTTGCCGTCCTTGCTGCTTGTCAATGACATCA 415
                     ********************************************** *************

consensus_193#0      ACAATGATTCGAATATCCTTCCGGGAACAAAGCTGGATCTTCATATGCATGATTCCAGTT 659
consensus_193#1      ACAATGATTCGAATATCCTTCCGGGA-CA------------------------------- 443
                     ************************** **                               

consensus_193#0      GCAATCGCTTTCTTGGCATTGTGCAAGCCTTGCAATTCATGGAGAAAGATACAGTGGCAA 719
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      TCATCGGCCCATTGTCTTCTACCACCGCCCATGTCCTTTCTCATCTTGCAAATGAACTCC 779
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      ACGTACCTCTGATGTCCTTTTCTGCAACTGATCCAACTCTTTCGTCACTTGAGTATCCGT 839
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      TCTTTGTGCGGACTACCGTCAGTGATCAATTTCAAATGACTGCTGTTGCTGACTTAGTTG 899
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      AGTATTATGGGTGGAAGCAAGTGACAACCATATTTGTGGATAATGATTATGGAAGAAATG 959
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      CAATATCCTCTTTAGGCGATGAACTTTCCAAGAGGCGATCTAAGATCCTGTATAAAGCTC 1019
consensus_193#1      ------------------------------------------------------------
                                                                                 

consensus_193#0      CAT 1022
consensus_193#1      ---