cluster # 1938

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Oryza sativa
cluster # 1938 cluster # 1938 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1938#0 length = 546 sequences # 1

consensus_1938#1 length = 487 sequences # 1

consensusID : consensus_1938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAATTTTTTTGGTGCCCAAGGGTTTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTGCCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAAGGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGAAATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCAGGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGGAATTTCCCTTTTAGGGGGGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTCCCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCCCAAAGGGGGGCCCCC]

[+] EMBL CF327281             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAATTTTTTTGGTGCCCAAGGGTTTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTGCCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAAGGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGAAATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCAGGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGGAATTTCCCTTTTAGGGGGGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTCCCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCCCAAAGGGGGGCCCCC]




>consensus_1938#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAATTTTTTTGGTGCCCAAGGGTTTTC
CCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTGCCAA
AAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAAGGGG
TTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGAAATT
GCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCAGGGA
AGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGGAATTTCCCTTTTAGGGGGGGGTAATT
TTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTCCCCCTAAAA
ATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCCCAAAGGGGG
GCCCCC

consensusID : consensus_1938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGCCCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATTGGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTTCTTTTGGGCCCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT]

[+] EMBL CF299352             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGCCCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAAACGGTTCCCGGGGAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATTGGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTTCTTTTGGGCCCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT]




>consensus_1938#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGCCCCA
AAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAAACCCGGGGA
AATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAAACGGTTCC
CGGGGAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGGAAAAAAAAAGG
GAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATTGGGGGGGCCCCCCCGGC
CCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAAAATCCCCCCCCCCCCGG
GGAAAGGGGGTTTTCTTTTGGGCCCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCT
GGGGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1938#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_1938#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                      ************************************************************

consensus_1938#0      TTTTTTTTTNTAAAGAAACGGGTTTAAAAAAAAAAA----TTTTTTTGGTGCCCAAGGGT 116
consensus_1938#1      TTTTTTTTTTTT----TTTTTTTTTAAAAAAAAGGGGCCCCTTTTTTTGGGGCCGGGGGC 116
                      ********* *           ***********        ****** * * **  *** 

consensus_1938#0      TTTCCCCCGGGCCCGGGATTTTTTTCCCCCAATTTTTAAGGGGAAAAATTTTGGGTTTTG 176
consensus_1938#1      CCCAAAATTTTCCCCCCCTCACCCCATGGAAGGGCCCAAGGGGAAATTTTTTAAA----A 172
                                 ***    *           *      *********  ****        

consensus_1938#0      CCAAAAAAACCCCCCCCTTTTTTTTTTAAAAAAAGGGGGCCCAAAAAAAAAGGGCAAAAA 236
consensus_1938#1      CCCGGGGAAATTCCCCCTTTAGGGGGGGGAAATTTTGGCCGGGGGGAAAAAAGGGGAAAA 232
                      **     **   ********         ***    ** *      ***** **  ****

consensus_1938#0      GGGGTTTCCCCCGGGCCCCAAAAAAAAATTTGGGGGGATTGGTTTTTTTGAAAAAAGGGA 296
consensus_1938#1      ACGGTT---CCCGGG------GAAAAAATGTTTCCCCCCCAAAATCCCCAAAAAAAAAAA 283
                        ****   ******       ******* *             *     ******   *

consensus_1938#0      AATTGCCCCCCCCCTGGGAAAAAAAGGCCCCACCTTCCTTTTTTTTCCCCCTTCACCCCA 356
consensus_1938#1      ACCCGGAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAAAGGGACCCCCCCCCCATTATT 343
                      *   *          *******   **     **            *****  **     

consensus_1938#0      GGGAAGGGCCCAAGGGGAAATTTTTTAAA-----ACCCGGGGGAATTTCCCTTTTAGGGG 411
consensus_1938#1      GGGGGGGCCCCCCCGGCCCCTTTTCAAAAGGGAAAACCTGGGGGCCCCCCTTTTTAAAAA 403
                      ***  ** ***   **    ****  ***     * ** ****     ** *****    

consensus_1938#0      GGGGTAATTTTGAGCTGGGGGAAAAAAGGGGAAAAACTGTTCCCTGGGAAAAAATGTTTC 471
consensus_1938#1      -----AATCCCCCCCCCCCCGGGGAAAGGGGG-----TTTTCTTTTGGG----------C 443
                           ***      *     *   *******      * ***  * **           *

consensus_1938#0      CCCCTAAAAATTCCCCAAAAAAAAAAACCCGGAAAAAAAAAGGGAAAACCCGGGGGGGCC 531
consensus_1938#1      CCCTTTTCCCTTTCCCCAAAAAAAAAACCCGGGGCCTGGGGGTT---------------- 487
                      *** *     ** *** ***************         *                  

consensus_1938#0      CAAAGGGGGGCCCCC 546
consensus_1938#1      ---------------