These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence [GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGTCGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGCGAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGGTGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGGGTGGTGGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCTCGCCGGCTCCGGCGAGGGGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGACGTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGACGGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCGCGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGACGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTGTTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGTTATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTGTGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGATGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGTCGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAGGTAATGCAATCA] [+] EMBL BE040700 [GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGTCGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGCGAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGGTGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGGGTGGTGGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCTCGCCGGCTCCGGCGAGGGGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGACGTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGACGGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCGCGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGACGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTGTTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGTTATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTGTGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGATGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGTCGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAGGTAATGCAATCA] consensusID : consensus_1945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGGCGGGCGCTCGCCTACGGCGGCGACCCGAACGCGAGGGACTACGACCACCGCGCGCCGCTCCACATCGCCGCCGCCGAGGGCCTCTACCTGATGGCGAAGCTGCTCGTCGACGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAG] [+] EMBL BE040479 [GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGGCGGGCGCTCGCCTACGGCGGCGACCCGAACGCGAGGGACTACGACCACCGCGCGCCGCTCCACATCGCCGCCGCCGAGGGCCTCTACCTGATGGCGAAGCTGCTCGTCGACGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGACGAAGGGCGCAGGTGCGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1945#0 GCATCTTGCGGCTTGCAAAGGGTTCGAAGATGTCGTCCAGTTCCTCCTCCACGAAGGCGT 60 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 CGACATCGATCTTTCCGACAAATTTGGCGAAGCTGAGCCTGGGGCACGACGCCGCTGGAC 120 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 GAAGGGCGCAGGTGCGGGAGCCGGACGATGGTGCAGCTGCTGGAGGCGGCCAAGTCCGGC 180 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 GAGCTCTCCAGGTACCCGGAGCGCGGCGAGGAGGTGCGGGACAAGATGCACCCGCGGCGG 240 consensus_1945#1 ------GCCGGGAGCCACCTGTGCACGGCGGTGGCGAGGGGCGACACGGACTTCGTCCGG 54 ** ** ** * ** * ** ** * *** * * * * ** *** consensus_1945#0 TGCTCCGTGTTCCCGCACCACCCGTGGGACGGCGGCGAGCGGCGGCGGGAAGGG-GTGGT 299 consensus_1945#1 CG---GGCGCTCGCCTACGGCG-GCGACCCGAACGCGAGGGACTACGACCACCGCGCGCC 110 * * * ** * ** * * * ** ***** * * ** * * * * consensus_1945#0 GGTGTGGATCCCGCACACCATCGAGGGGCTCGTCAGCTCGGCGCAGGAGAAGCTCGGCCT 359 consensus_1945#1 GCTCCACATCGC---CGCCGCCGAGGGCCT---CTACCTGATGGCGAAGCTGCTCGTCGA 164 * * *** * * ** ****** ** * * * * * ** ***** * consensus_1945#0 CGCCGGCTCCGGCGAGG--GGCTCCGGCTGCTCGGCGAGGACGGCGCCAGAGTGCTCGAC 417 consensus_1945#1 CGCCGGCGCCAGCGTGTTCGCCACCGACCGGTGGGGCACGACGCCGCTGGA-CGAAGGGC 223 ******* ** *** * * * *** * * * ** * **** *** ** * * * consensus_1945#0 GTCGACATGGTCCACGACGGGCAGAAGCTCTACCTCTTCGGCGGCGGCGGCGGCGATGAC 477 consensus_1945#1 GCAGGTGCGGGAG----------------------------------------------- 236 * * ** consensus_1945#0 GGCGGCACGGAGGCAAGGCAGTGAAGGGTTGCACCGTTTCTCCTCAACTTCCGATTTGCG 537 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 CGCCAGTTTTGCGGTGTACCATAGCGGCGGGCATAGCCCGTGTGATCGATGGAAGCCTGA 597 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 CGTGTCATTACTCACGGGCCCACAAATGAGTGACCACTTACTTTGGGTTTTAGATCCTTG 657 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 TTGGGTGTAGAACATTGGGGGGAAAGGAACGAAAGGAGGAACCGGTTGATGGCCGATGGT 717 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 TATCCAGGAATGTTTGTGGAGGAAATCTATTTTTGGCCGGTTTTAAAGGAAAGGAGGGTG 777 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 TGGGGTAAAAAGGAAAATGGGGGGGCGAGGTTGGGCGGGCGGCGGGAGCTGAACGGAAGA 837 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 TGGCTGGCCGTGCGGCCCCCGGGGTAAGGAGCGGATCACTCCTAGGGGGGACTGGACAGT 897 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 CGGCAGTTTCGTTGGGTGGTCGCCAGCAAACTGTAGAGCTGAAAGGTAAGAGGATGTTAG 957 consensus_1945#1 ------------------------------------------------------------ consensus_1945#0 GTAATGCAATCA 969 consensus_1945#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||