These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATGGCTCCTTGG] [+] EMBL C25835 [GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATGGCTCCTTGG] consensusID : consensus_1974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 120 fasta sequence [TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGNCGTGGCTCTGAATTCT] [+] EMBL C25836 [TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGNCGTGGCTCTGAATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1974#0 GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGT 60 consensus_1974#1 ------------------TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGT 42 * ** *** *** * * **** ****** ****** consensus_1974#0 CTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNT 120 consensus_1974#1 CTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNT 102 ************************************************************ consensus_1974#0 GCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATG 180 consensus_1974#1 GNCGTGGCTCTGAATTCT------------------------------------------ 120 * **************** consensus_1974#0 GCTCCTTGG 189 consensus_1974#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||