These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATTTGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGAAAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGCCAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCATTTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA] [+] EMBL CF330386 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATTTGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGAAAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGCCAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCATTTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA] consensusID : consensus_1976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCAATTGGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGAAATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGCCAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACATTGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAAACAGCTTTTCACGGGGCACAA] [+] EMBL CF313276 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAACATCAATTGGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACAGTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGAAATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGCCAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACATTGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAAACAGCTTTTCACGGGGCACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1976#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1976#1 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38 ************* ************************ consensus_1976#0 TTTTTGGGGGAAAAGCAACAAACCCCATGTTCTCACATTTTTGAAAAATTACCCTCAATT 120 consensus_1976#1 TTTTT--------------------------------TTTTTAAGAAA----CATCAATT 62 ***** ***** * *** * ****** consensus_1976#0 TGCTGCCCTCCGATTTAAACAAATAACCCCCAAGCGAACCCAAAGGGGCCCAAATTGACA 180 consensus_1976#1 GGCGGGCCTCCGATTTAAACAAATAACAACAAAGCGAACCCAAATGGGCTCAAATTGACA 122 ** * ********************* * ************* **** ********** consensus_1976#0 GTTTTTTTTTGCAACCAAAAACAATGGACCCCGGAGGGGCCCCCTTCCCTCCCAAATTGA 240 consensus_1976#1 GTTTTTTTTTGCAACCAAAAACAATGGACCCTGGATGGGCCCCCTTCCATGCCAAGTTGA 182 ******************************* *** ************ * **** **** consensus_1976#0 AAAACTGAACCCCCTACTTTTTTTTCCCAAAACCGGGGGAAATTTTGGAAACCCCCCGGC 300 consensus_1976#1 AATACTGAACCCCCTACTTTTTTTTCCCAATACCGGGGGACATGTTGTAAACCCCACGGC 242 ** *************************** ********* ** *** ******* **** consensus_1976#0 CAATTATAAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCCACAAATTTGAACCCAT 360 consensus_1976#1 CAATCATGAACAAACTGGGGCCCCCCCCCCCAAGGGGAATGGCAACAAATGTGATCACAT 302 **** ** *********************************** ****** *** * *** consensus_1976#0 TTTAACCCCCCTTCAGGGAGGGGGGCTGGGGTAAAATCTAAAAAAA-------------- 406 consensus_1976#1 TGTAACCCCCCTTCAGGGAGGGGGGCTTGGGTAAATTCTGAAAATATTGGGGGGGCTTAA 362 * ************************* ******* *** **** * consensus_1976#0 --------------------- consensus_1976#1 ACAGCTTTTCACGGGGCACAA 383 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||