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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1732 fasta sequence
[GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGCCACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGGGCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCGCTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAGGCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGGTGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACACATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGATCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGATTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTTCCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACGGGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTGTGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGGCAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACCGCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTTTTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTAGATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAAAAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATCACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACATAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATATGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATCTGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACCAAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTGCCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGTTATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAATCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTACGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATTTATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCTTTCTTTAACATTTAATACATATCCATCCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCAGCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG]
[+] EMBL AK066750 [GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGCCACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGGGCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCGCTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAGGCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGGTGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACACATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGATCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGATTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTTCCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACGGGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTGTGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGGCAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACCGCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTTTTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTAGATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAAAAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATCACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACATAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATATGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATCTGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACCAAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTGCCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGTTATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAATCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTACGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATTTATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCTTTCTTTAACATTTAATACATATCCATCCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCAGCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG]
consensusID : consensus_1979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[CGACCATGTAACCCCAATGGCTAAAATTTTGATGCATTGCCATAATGATTTGCCATGCTAATAATGCTGATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAATACATGATGCCATGCCATCATTTCTACACATTTAGCATATATTTATCATGTATTTGCACCAAGCACGGAGATGTAAGTGATTTGTGATTCAAGACATAACTTTTATATACCCGCTTATTCACTAAAAAAAAAA]
[+] EMBL BI812658 [CGACCATGTAACCCCAATGGCTAAAATTTTGATGCATTGCCATAATGATTTGCCATGCTAATAATGCTGATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAATACATGATGCCATGCCATCATTTCTACACATTTAGCATATATTTATCATGTATTTGCACCAAGCACGGAGATGTAAGTGATTTGTGATTCAAGACATAACTTTTATATACCCGCTTATTCACTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1979#0 GCGCCGCTGCTTGCCTCCGCTGAGCTCATCTCGCTGCCCTCCTCACCCATCGCCCCTGGC 60
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CACGCCTTCACTGCCGACTTCGCCGCCTTGGCTACGCTCGCGGTCGCGCTCGCCTGGAGG 120
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 GCCGCCGCGCCGTGGCGGGATGGGGTCGTCGCGCAGACTCCACCGCACCAGGTCGCCGCG 180
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CTACTTATCTCCACCGCACCGTCGGCCATGGAGATAAAGGCTGCTGCCACCGGCGATAAG 240
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 GCGGTAGAGGAGCACCTTGTGATTTTTTTTTTGTCATCTCCATCTAGGTAGAGGAGCGGG 300
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TGAGGTGAAGCGATGATTTCTTTGATTGGGATGTTTTGATTGAGGATTACTTAAGTACAC 360
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 ATGTGCCTTTCTTGGGTAAGGGAAGGATGTGGGTGGTTGATTTGGAGGGAGTTTCTTAGA 420
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TCGGTTTGGGATTGGGGGAGAGTCGCTGCTGGATTTGGGTTTCTTGCTGGTTTCTCATGA 480
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TTCTTCTTCCCCCACAGCCACGAGATAGCTAGAAGAAAATGGTAGGCCAATGCAGTCTTT 540
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CCTTCTCGAATGCCTCGGCAGCGAGAGGAGCTGTCCTTGAAAATTTGTGGTTGTTTTACG 600
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 GGGATCTTTGCCTCTTTGTGCTTTCCTGATTCGCTAGCTTTGATGCTGGTTCTTGCCTTG 660
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TGATGTGGTGTATCCGATTTGGTTCATTTGTTGCATTGAAAACCTCCTGGTCTGGGCTGG 720
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CAGACGCTCAGGATTTCTCGGAGGCGGGAGGCCCAGCACCGCGCCATGCGTTTTTCCACC 780
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 GCGGGGGCAACCGAGACGGATTACACGAATACACAACACGGAAGTCACACGCGTAGATTT 840
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TTATCGGATAACAGGAGACGGACGATTTTTTTAGCGGAAGCCTTGCGTATTTTTTAATTA 900
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 GATATATATAGATTTATATGCTTCAAGTCCTTGGCGGTTGGATCTAGATCGGAGGGACAA 960
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 AAAATTTGACAGATTGAGAGGGTTGTTTTCTGTCGAATGAGCAGTAGACAGTCCATTATC 1020
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 ACAAAACTATAGATTTAGAACTAATTTAGTCATAAAATAATAATGCTTATAGATCCAACA 1080
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TAATAATAATGGTTATAGGGATTTAAAGTTGTAGTTTTGTGATAACTCCAATTTTAAATA 1140
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TGTAGTTTTGTGATATTTAACTTTAAATCTGTAGTTTTGTGATAAATATGATGCTAAATC 1200
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TGTAATTTTGTGATATAACGCCTTAAATTTGTAGTTTTGCAATAGTTTAATCAAAATACC 1260
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 AAAAGTTTTGTGAAATTTACTCTTATGCGTTTCTTGCCAATTAATTACTCCACATGTTTG 1320
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CCACCATTAAAACACATAATAGCATATTTGCATTAAGAAAAAAGAAGCTAGAATACATGT 1380
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TATTTAGCTTCTCCTAAACCTCCAACTCTTTTCTTTCAAACAGTCTAGTTCCCACCTAAA 1440
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 TCTTAGGAATATGTGGTTGTAGAATAAAATGAATTAGAAAAAAAATACTGAAGCTAACTA 1500
consensus_1979#1 ------------------------------------------------------------
consensus_1979#0 CGTCACATCATCTATAATTTAGTACATATTAAAACTCGACATGTAACCAATGCTAAAATT 1560
consensus_1979#1 ----CGACCATGTA-ACCCCAATGGCTA--AAATTTTGATGCATTGCCA---TAATGATT 50
* *** ** * * * ** *** * ** * *** * ***
consensus_1979#0 TATCATTTCCATAATATTTCAATCTATATCTATCTATCATTTCT-TTCTTTAACATTTAA 1619
consensus_1979#1 TGCCATGCTAATAATGCT--GATGCTGATGCACTTTGCTTTGCTGTTAACCACTGTTGAA 108
* *** ***** * ** ** * * * ** ** ** * ** **
consensus_1979#0 TACATAT--CCAT-CCATCATTTCTACAACATTTAGCATATATTTATCATGTATTTGGCA 1676
consensus_1979#1 TACATGATGCCATGCCATCATTTCTACA-CATTTAGCATATATTTATCATGTATTTG-CA 166
***** **** ************** **************************** **
consensus_1979#0 GCAAAGCAGGAGATGTAAGTGATTTGTGATTCAAAGACATAACTTTTATATACCAG---- 1732
consensus_1979#1 CCAAGCACGGAGATGTAAGTGATTTGTGATTCAA-GACATAACTTTTATATACCCGCTTA 225
*** ************************** ******************* *
consensus_1979#0 ----------------
consensus_1979#1 TTCACTAAAAAAAAAA 241
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||