|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2419 fasta sequence
[TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCGACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAAATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCCTCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGTCTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGAGCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTTGGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCGACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATCCTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTCCTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGAGGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATGTCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATAAGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTAGATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTGCATCCGTCATTCCATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGGGTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCTCGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATTGGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGCTCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGGGTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAATCACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAAATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGCAAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAAATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCGGAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTACAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAGAAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAATATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCTTGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAGCGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACATACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAAGACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGACAATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAGTTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAGTATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCTGTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGACATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCATTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAACAAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACATGTACAAGTAACAAGGAGAC]
[+] EMBL AK072459 [TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCGACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAAATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCCTCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGTCTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGAGCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTTGGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCGACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATCCTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTCCTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGAGGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATGTCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATAAGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTAGATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTGCATCCGTCATTCCATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGGGTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCTCGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATTGGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGCTCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGGGTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAATCACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAAATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGCAAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAAATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCGGAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTACAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAGAAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAATATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCTTGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAGCGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACATACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAAGACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGACAATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAGTTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAGTATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCTGTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGACATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCATTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAACAAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACATGTACAAGTAACAAGGAGAC]
consensusID : consensus_1985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[AGGCAACTTGTGATTTACCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGGAGGATGGAACGTACCCACTTGTATTGACAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCCATGTATTTTTGTTTGTCCTGCTTGTACACACATGGAACATTACAAGTACATGTACATGTAACAAGGAGACAAGGAGTTGTACACAACCACATATCTACTATCACCTACCTAGGTTTCTCCTCACCTACAGCTGATAGGATGTTGTTTGGTCACAGGGGCGACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAGTGAAGTCGGTCAAGCCTCCGGGATGGACCCGTAGAGGTAGCAACATTCTGAATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA]
[+] EMBL BI812592 [AGGCAACTTGTGATTTACCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTGTGCTGGAGGATGGAACGTACCCACTTGTATTGACAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCCATGTATTTTTGTTTGTCCTGCTTGTACACACATGGAACATTACAAGTACATGTACATGTAACAAGGAGACAAGGAGTTGTACACAACCACATATCTACTATCACCTACCTAGGTTTCTCCTCACCTACAGCTGATAGGATGTTGTTTGGTCACAGGGGCGACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAGTGAAGTCGGTCAAGCCTCCGGGATGGACCCGTAGAGGTAGCAACATTCTGAATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1985#0 TCTTCTTCCGCCGTGGACTCATCGTCTCCAACGCCACACGACACGACGCGACGCGACGCG 60
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ACGCGAGAAAAAGTCAAAAGCAGCAGCAGCGGCGGAGCAACCAAGCCTACCTCCACCAAA 120
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ATCTTCTCCCCCCCTCTCCTCTCCTCTCCACCCGCCGGTGACCCGAGCCCCCCCACCGCC 180
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TCACGCCGCCGCCGCCGCCGCCGCGGGGAGTTCCATTCCACCGGGTCGCCTTCCGGCCGT 240
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 CTCCTGCAGAGAGGTTCATGAGGGGCTCGAGGATGAATCCAGGTGACCGTAGAACGCGGA 300
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GCACGATGTCCATCGTAATTGTGATGAGTTTGTGCTGCTTCTTTTATATACTAGGAGCTT 360
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GGCAGAAAAGTGGGACCGGAAGGGGGGATAGTATTGCATTGAGGGTGACAAAAGAGACCG 420
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ACTGTACAATCTTGCCAAACTTGCACTTTGAGACCCATCATAGCTTAGGTGGTGTTAATC 480
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 CTTTGGTCATGACCGATAAAGTCTTTGAGCCATGCCATATTCGATACAGTGACTATACTC 540
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 CTTGTCAGGATCAGAACCGAGCAATGAACTTTCCTAGAGAAAATATGAACTACCGAGAGA 600
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GGCATTGTCCTACAGAGACTAAGAAACTGCGCTGTCTAATCCCAGCACCCAAAGGCTATG 660
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TCACCCCTTTTCCTTGGCCCAAGAGCCGTGACTATGTTCCATATGCAAATGCACCATATA 720
consensus_1985#1 ----------------------------AGGCAACTTGTGATTTACCAACACATTTTGTA 32
* * * * ** * * ** ** * **
consensus_1985#0 AGAATTTGACAGTTGAGAAGGCTGTTCAGAACTGGGTCCAGTTTGAGGGAGATGTGTTTA 780
consensus_1985#1 GG---TAAAGAGGAAGATAGTTTGTGCTGGA--GGATGGAACGT-ACCCACTTGTATTGA 86
* * * ** ** *** * * * ** * * * * * *** ** *
consensus_1985#0 GATTTCCAGGAGGGGGGACAATGTTTCCCAATGGAGCAAATGCCTACATTGATGAGCTTG 840
consensus_1985#1 CAGATCCACAACAGGGAACACTGTTTGCCGAGTGAACACAGTGTTGCCCC-ATGTATTTT 145
* **** * *** *** ***** ** * ** ** * * * *** **
consensus_1985#0 CATCCGTCATTCC-ATTTACTGATGGCACCATTAGGACTGCACTTGATACTGGATGCGGG 899
consensus_1985#1 TGTTTGTCCTGCTTGTACACACATGGAAC-ATTACAAGTACAT---GTACATGTAACAAG 201
* *** * * * ** **** ** **** * * ** *** * * *
consensus_1985#0 GTTGCCAGCTGGGGTGCTTACCTAATGGACAGAAATGTATTAACCATGTCATTTGCACCT 959
consensus_1985#1 G-----AGACAAGGAGTT------GTACACAACCACATATCTACTA--TCACCTA---CC 245
* ** ** * * * *** * *** ** * *** * *
consensus_1985#0 CGAGACTCACATGAAGCTCAGGTTCAATTTGCATTGGAGCGAGGTGTTCCTGCAGTAATT 1019
consensus_1985#1 TAGGTTTCTC------CTCACCTACAGCTGATA--------GGATGTTGTT-TGGTCACA 290
* ** * **** * ** * * * **** * ** *
consensus_1985#0 GGAGTGCTTGGAACTATAAAACTACCATACCCCTCTGGATCTTTTGATATGGCCCATTGC 1079
consensus_1985#1 GGGGC----GACGCTACAGCCTGGTCACACATATGATGGATTAGATATAGTGTACTTTAG 346
** * * *** * ** ** * * * *** * * **
consensus_1985#0 TCACGCTGCTTAATCTCCTGGAAGTCAAATGATGCGATGTACATGTTTGAAGTAGATCGG 1139
consensus_1985#1 TGAAGTCGGTCAAGCCTCCGGGA------TGGACCCGTAGA---GGTAGCAACATTCTGA 397
* * * * * ** * * ** * ** * * * * * * * * *
consensus_1985#0 GTTCTGAGGCCTGGTGGCTATTGGATATTGTCTGGTCCTCCCATCAATTGGAAGACAAAT 1199
consensus_1985#1 ATTCTGCTCGACGGAGTTTATAACAGCACCTTTGCTCTTGCTGCTAAAAAAAAAA----- 452
***** ** * *** * * ** ** * * ** ** *
consensus_1985#0 CACCAAGCATGGAAAAGATCCAAGGAAGACTTAGAGGCAGAACAAAATGTAATCGAAAAA 1259
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ATTGCTGAAATGTTGTGCTGGGGTAAGATTCATGAGAAGGGAGATACTGTTATTTGGCGC 1319
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 AAAAAGGCAGATTCAAATGAATGTCATAATAAGGATGACCATCCTAGCAAGATGTGCAAA 1379
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ATTCAAGATGCAGATGATGTCTGGTATAAGAAAATGGAAGGTTGTATAACACCTTTCCCG 1439
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GAAGAAGCACAGCTACGGAAATTCCCAGAGAGACTATTTGCTGCCCCTCCCAGAATTCTA 1499
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 CAGGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAG 1559
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 AAGTATGTCAGTACTTACAAGAGGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAAT 1619
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATTATTGATTCTCCAATATCT 1679
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAG 1739
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 CGAGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACA 1799
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TACGACTTGATACATGCCAATGGTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAA 1859
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGCGCAGTCATACTGCGGGAC 1919
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 AATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAG 1979
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TTGCTTGATCATGAAGATGGGCCTCATATACCTGAGAAGATTTTGGTTTCAGTGAAAAAG 2039
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TATTGGGTTGGCAATGAAGAAGAAAACAGTTCATAGATACCCTTTTTTTATGTTGTACCT 2099
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 GTTCATAGATCCGGTTCATACTTCATAGGTACAGGCCTCACCATTCCCAATCAAGATGAC 2159
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 ATACAGGTAGAGTATTTTTTATGTCCTGCATATTGGTTGTGCATATACAGAAGCAGGGCA 2219
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TTAAGGGCAAACGTTGGTGATTTGCCAACACATTTTGTAGGTAAAGAGGAAGATAGTTTG 2279
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TGCTGAGATGAACGTACCCATTGTATTACAGATCCACACAGGAACATTTTCCGAGTGAAC 2339
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 AAGTGTTGCCCCATGTATTTTGTTTGTGCTGCTTGTACAACATGGAACATTAGCAGTACA 2399
consensus_1985#1 ------------------------------------------------------------
consensus_1985#0 TGTACAAGTAACAAGGAGAC 2419
consensus_1985#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||