cluster # 2

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Oryza sativa
cluster # 2 cluster # 2 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2#0 length = 1031 sequences # 1

consensus_2#1 length = 659 sequences # 1

consensusID : consensus_2#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1031
fasta sequence

                              [GAAATTCTTCTGCTATACTCACCCACTTGCCAATTTGCCATTGCCAACACCTTACAAAGAGAGGCACTCCTCCATTGCAATGCTCCATGGTAGCTAGCTAGCTGCACACCACAAGGCTTAGAAAGAGTGTGTGAGTGAGAGACTGAGAGATGAGCAGCCATGAGAGGTTCAGGCTGTCCCATCTCATGCCAAACTCATGGTTCTACAAGCTGAGGGACATGAAGAGGCCCAGGCCAACATCAAGCCGGATGATCACCGCAGCAGATCATGCAGCAAGAAGCTCCAGGAGATCGTCGTCGTCGTCAAGCAGCATCCACCACTACTACCTCCATGGACATGGAACCACCACTCCCAAGCCTCTCCCGTTGTCACCGCCGCGACGATCCTACTACCCCTACCTGGAACGAGCCAAGCAGATGCCACTGATGGAGAAGGAATCTCAGCTCATCTCCCACTCCCCTCTCCACCAAAGAATCCCCGCCACAGCCATTCCCGGAGACCACCACGACGGCGAGTTTCAAGACTTGCAGCTACGTCCTATACGCACGAGGCCACCGTCGGCGGCGGCGGCGTCGGCCGAGCCGAGGAGGACGGCGAGCGGGAGCGGCACGTGCCCGAGCTCGCCGAGGATGAGGAGCAGGAGGCTGCACGTTCTCGGCGGCTGCGAGTGTAGGGCTGGTAGTGGTCGCCGGAGGAGCGGCGGCGGTGGGTTCGCGGTGGTGAAGGCGTCGGCGGAGCCGGCGAGGGACTTCCGGGAGAGCATGGTGGAGATGGTGGTCGGGAACGGGATGCGGTCGCCGGAGGATTTGCTGGAGCTGCTCGAGTGCTACCTGTCGCTCAACGCGCGGGAGCACCACGGCGTGATCATGGAGGCGTTCAGGGGCGTCTGGGTCGAGATCGTCGCTGATGCTGATTGTTGCGTTGGGTTGTGAGCTATATTGATTCTGTTTTTGTATAGTTGGATTGATCGAATCGATTGAGCTGTAAATGGATATATTGTGCCGTTAATTTTTGGTGTTAATGAATCAAGC]

[+] EMBL AK107504             [GAAATTCTTCTGCTATACTCACCCACTTGCCAATTTGCCATTGCCAACACCTTACAAAGAGAGGCACTCCTCCATTGCAATGCTCCATGGTAGCTAGCTAGCTGCACACCACAAGGCTTAGAAAGAGTGTGTGAGTGAGAGACTGAGAGATGAGCAGCCATGAGAGGTTCAGGCTGTCCCATCTCATGCCAAACTCATGGTTCTACAAGCTGAGGGACATGAAGAGGCCCAGGCCAACATCAAGCCGGATGATCACCGCAGCAGATCATGCAGCAAGAAGCTCCAGGAGATCGTCGTCGTCGTCAAGCAGCATCCACCACTACTACCTCCATGGACATGGAACCACCACTCCCAAGCCTCTCCCGTTGTCACCGCCGCGACGATCCTACTACCCCTACCTGGAACGAGCCAAGCAGATGCCACTGATGGAGAAGGAATCTCAGCTCATCTCCCACTCCCCTCTCCACCAAAGAATCCCCGCCACAGCCATTCCCGGAGACCACCACGACGGCGAGTTTCAAGACTTGCAGCTACGTCCTATACGCACGAGGCCACCGTCGGCGGCGGCGGCGTCGGCCGAGCCGAGGAGGACGGCGAGCGGGAGCGGCACGTGCCCGAGCTCGCCGAGGATGAGGAGCAGGAGGCTGCACGTTCTCGGCGGCTGCGAGTGTAGGGCTGGTAGTGGTCGCCGGAGGAGCGGCGGCGGTGGGTTCGCGGTGGTGAAGGCGTCGGCGGAGCCGGCGAGGGACTTCCGGGAGAGCATGGTGGAGATGGTGGTCGGGAACGGGATGCGGTCGCCGGAGGATTTGCTGGAGCTGCTCGAGTGCTACCTGTCGCTCAACGCGCGGGAGCACCACGGCGTGATCATGGAGGCGTTCAGGGGCGTCTGGGTCGAGATCGTCGCTGATGCTGATTGTTGCGTTGGGTTGTGAGCTATATTGATTCTGTTTTTGTATAGTTGGATTGATCGAATCGATTGAGCTGTAAATGGATATATTGTGCCGTTAATTTTTGGTGTTAATGAATCAAGC]




>consensus_2#0
GAAATTCTTCTGCTATACTCACCCACTTGCCAATTTGCCATTGCCAACACCTTACAAAGA
GAGGCACTCCTCCATTGCAATGCTCCATGGTAGCTAGCTAGCTGCACACCACAAGGCTTA
GAAAGAGTGTGTGAGTGAGAGACTGAGAGATGAGCAGCCATGAGAGGTTCAGGCTGTCCC
ATCTCATGCCAAACTCATGGTTCTACAAGCTGAGGGACATGAAGAGGCCCAGGCCAACAT
CAAGCCGGATGATCACCGCAGCAGATCATGCAGCAAGAAGCTCCAGGAGATCGTCGTCGT
CGTCAAGCAGCATCCACCACTACTACCTCCATGGACATGGAACCACCACTCCCAAGCCTC
TCCCGTTGTCACCGCCGCGACGATCCTACTACCCCTACCTGGAACGAGCCAAGCAGATGC
CACTGATGGAGAAGGAATCTCAGCTCATCTCCCACTCCCCTCTCCACCAAAGAATCCCCG
CCACAGCCATTCCCGGAGACCACCACGACGGCGAGTTTCAAGACTTGCAGCTACGTCCTA
TACGCACGAGGCCACCGTCGGCGGCGGCGGCGTCGGCCGAGCCGAGGAGGACGGCGAGCG
GGAGCGGCACGTGCCCGAGCTCGCCGAGGATGAGGAGCAGGAGGCTGCACGTTCTCGGCG
GCTGCGAGTGTAGGGCTGGTAGTGGTCGCCGGAGGAGCGGCGGCGGTGGGTTCGCGGTGG
TGAAGGCGTCGGCGGAGCCGGCGAGGGACTTCCGGGAGAGCATGGTGGAGATGGTGGTCG
GGAACGGGATGCGGTCGCCGGAGGATTTGCTGGAGCTGCTCGAGTGCTACCTGTCGCTCA
ACGCGCGGGAGCACCACGGCGTGATCATGGAGGCGTTCAGGGGCGTCTGGGTCGAGATCG
TCGCTGATGCTGATTGTTGCGTTGGGTTGTGAGCTATATTGATTCTGTTTTTGTATAGTT
GGATTGATCGAATCGATTGAGCTGTAAATGGATATATTGTGCCGTTAATTTTTGGTGTTA
ATGAATCAAGC

consensusID : consensus_2#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [TTTTTTTTTTTTTTTTTAACGAAAGGGCAGACCTGGCACTATTCTTTAGCACCGTACAAGTTCGGGAGCCCAGAACACAACCAATGCATAAGTTTCTAAAGTCTAAACAATCATACCGCTTTCTTTCCCTTTGTACATACAACAATCAAGGCAATGCATATACCATTTGGCCCAAATTAACTTGATTTATCTGGGCAACTTTGACAAGTAAAAAACCTTTGGGCTGTTTTCCATGGGTGGACCATTTGTATTTCTTAAATGCTAAAGAAATTTGCCCTGATCATTGCAACCGCAACTACATTAGTACAATTGCTATGATGATGATGCTGAGGCCGGGACAGGCTTAATTGGGGCCTTTCTTGGGGTCACAATCTGCAAAGTGTTTCAAAGCAACTCACCATTTCATCATTGGTGATGAGCTCAAAAATTCTTCTGCTATACTCACCCACTTGGCAATTTGCCATTGCCAACACCTTACAAAGAGAGGCACTCCTCCATTGCGATGCTCCATGGGAGCTAGGTGGCTGGACACAACAAGGCTAAAAAAGAGTGGGTGAAGGAGAAACTGGACAGAGAGCACGCCTGAGAGGTTAAGGGTTTTCCGATATCACGCCCAAAGTAGTGGTGTTACCAGCGTGAGGGACATGAAGAGGCCCAGG]

[+] EMBL CA761558             [TTTTTTTTTTTTTTTTTAACGAAAGGGCAGACCTGGCACTATTCTTTAGCACCGTACAAGTTCGGGAGCCCAGAACACAACCAATGCATAAGTTTCTAAAGTCTAAACAATCATACCGCTTTCTTTCCCTTTGTACATACAACAATCAAGGCAATGCATATACCATTTGGCCCAAATTAACTTGATTTATCTGGGCAACTTTGACAAGTAAAAAACCTTTGGGCTGTTTTCCATGGGTGGACCATTTGTATTTCTTAAATGCTAAAGAAATTTGCCCTGATCATTGCAACCGCAACTACATTAGTACAATTGCTATGATGATGATGCTGAGGCCGGGACAGGCTTAATTGGGGCCTTTCTTGGGGTCACAATCTGCAAAGTGTTTCAAAGCAACTCACCATTTCATCATTGGTGATGAGCTCAAAAATTCTTCTGCTATACTCACCCACTTGGCAATTTGCCATTGCCAACACCTTACAAAGAGAGGCACTCCTCCATTGCGATGCTCCATGGGAGCTAGGTGGCTGGACACAACAAGGCTAAAAAAGAGTGGGTGAAGGAGAAACTGGACAGAGAGCACGCCTGAGAGGTTAAGGGTTTTCCGATATCACGCCCAAAGTAGTGGTGTTACCAGCGTGAGGGACATGAAGAGGCCCAGG]




>consensus_2#1
TTTTTTTTTTTTTTTTTAACGAAAGGGCAGACCTGGCACTATTCTTTAGCACCGTACAAG
TTCGGGAGCCCAGAACACAACCAATGCATAAGTTTCTAAAGTCTAAACAATCATACCGCT
TTCTTTCCCTTTGTACATACAACAATCAAGGCAATGCATATACCATTTGGCCCAAATTAA
CTTGATTTATCTGGGCAACTTTGACAAGTAAAAAACCTTTGGGCTGTTTTCCATGGGTGG
ACCATTTGTATTTCTTAAATGCTAAAGAAATTTGCCCTGATCATTGCAACCGCAACTACA
TTAGTACAATTGCTATGATGATGATGCTGAGGCCGGGACAGGCTTAATTGGGGCCTTTCT
TGGGGTCACAATCTGCAAAGTGTTTCAAAGCAACTCACCATTTCATCATTGGTGATGAGC
TCAAAAATTCTTCTGCTATACTCACCCACTTGGCAATTTGCCATTGCCAACACCTTACAA
AGAGAGGCACTCCTCCATTGCGATGCTCCATGGGAGCTAGGTGGCTGGACACAACAAGGC
TAAAAAAGAGTGGGTGAAGGAGAAACTGGACAGAGAGCACGCCTGAGAGGTTAAGGGTTT
TCCGATATCACGCCCAAAGTAGTGGTGTTACCAGCGTGAGGGACATGAAGAGGCCCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2#0      GAAATTCTTCTGCTATACTCACCCACTTGCCAATTTGCCATTGCCAACACCTTACAAAGA 60
consensus_2#1      -------------------------------------TTTTTTTTTTTTTTTTTAACGAA 23
                                                           **         **  *   *

consensus_2#0      GAGGCACTCCTCCATTGCAATGCTCCATGGTAGCTAGCTAGCTGCACACCACAAGGCTTA 120
consensus_2#1      AGGGCAGACCTG----GCACTATTCTTTAGCACCGTACAAGTTCGGGAGCCCAGAAC--A 77
                     ****  ***     *** *  **  * * * *   * ** *    * * **   *  *

consensus_2#0      GAAAGAGTGTGTGAGTGAGAGACTGAGAGATGAGCAGCCATGAGAGGTTCAGGCTGTCCC 180
consensus_2#1      CAACCAATGCATAAGT----TTCTAAAGTCTAAACAATCATACCGCTTTC--TTTCCCTT 131
                    **  * **  * ***      ** *    * * **  ***      ***    *  *  

consensus_2#0      ATCTCATGCCAAACTCATGGTTCTACAAGCTGAGGGACATGAAGAGGCCCAGGCCAACAT 240
consensus_2#1      TGTACATACAACAATCAAGGCAATGCAT--------ATACCATTTGGCCCAAATTAACTT 183
                       *** * * * *** **   * **         * *  *   ******    *** *

consensus_2#0      CAAGCCGGATGATCACCGCAGCAGATCATGCAGCAAGAAGCTCCAGGAGATCGTCGTCGT 300
consensus_2#1      -------GAT--TTATCTGGGCAACTTTGACAAGTAAAAAACCTTTGGGCTGTTTTCCAT 234
                          ***  * * *   ***  *    **   * **   *   * * *  *   * *

consensus_2#0      CGTCAAGCAGCATCCACCACTACTACCTCCATGGACATGGAACC-ACCACTCCCAAGCCT 359
consensus_2#1      GGGTGGACCATTTGTATTTCTTAAATGCTAAAGAAATTTGCCCTGATCATTGCAACCGCA 294
                    *     *    *  *   **   *     * * *  * *  *  * ** * * *   * 

consensus_2#0      CTCCCGTTGTCACCGCCGCGACGATCCTACTACCCCTACCTGGAACGAGCCAAGCAGATG 419
consensus_2#1      ACTACATTAGTACAATTGCTATGATGATGATGCTGAGGCC-GGGACAGGCTTAATTGGGG 353
                       * **   **    ** * ***  *  * *     ** ** **  **  *   *  *

consensus_2#0      CCACTGATGGAGAAGGAATCT-CAGCTCATCTC----CCACTCCCCTCTCCACCAAAGA- 473
consensus_2#1      CCTTTCTTGGGGTCACAATCTGCAAAGTGTTTCAAAGCAACTCACCATTTCATCATTGGT 413
                   **  *  *** *    ***** **     * **    * **** **  * ** **  *  

consensus_2#0      -ATCCCCGCCACAGCCATTCCCGGAGAC-CACCACGACGGCGAGTTTCAAGACTTGCAGC 531
consensus_2#1      GATGAGCTCAAAAATTCTTCTGCTATACTCACCCACTTGGCAATTTGCCA---TTGC--C 468
                    **   * * * *    ***    * ** ****     *** * ** * *   ****  *

consensus_2#0      TACGTCCTATACGCACGAGGCCACCGTCGGCGGCGGCGGCGTCGGCCGAGCCGAGGAGGA 591
consensus_2#1      AACACCTTACAAAGA-GAGGCACTCCTCCATTGCGATG-CTCCATGGGAGCTAGG----- 521
                    **  * ** *   * *****   * **    ***  * *  *    ****   *     

consensus_2#0      CGGCGAGCGGGAGCGGCACGTGCCCGAGCTCGCCGAGGATGAGGAGCAGGAGGCTGCACG 651
consensus_2#1      TGGCTGGACACAACAAGGCTAAAAAAGAGTGGGTGAAGGAGAAACTGGACAGAGAGCACG 581
                    ***  *    * *    *          * *  ** *  **        **   *****

consensus_2#0      TTCTCGGCGGCTGCGAGTGTAGGGCTGGTAGTGGTCGCCGGAGGAGCGGCGGCGGTGGGT 711
consensus_2#1      C-CTGAGAGGTTAAGGGTTTT---CCGATA-TCACGCCCAAAGTAGTGGTGTTACCAGCG 636
                     **  * ** *  * ** *    * * ** *     **  ** ** ** *      *  

consensus_2#0      TCGCGGTGGTGAAGGCGTCGGCGGAGCCGGCGAGGGACTTCCGGGAGAGCATGGTGGAGA 771
consensus_2#1      TGAGGGACATGAAGAGGCCCAGG------------------------------------- 659
                   *   **   *****  * *   *                                     

consensus_2#0      TGGTGGTCGGGAACGGGATGCGGTCGCCGGAGGATTTGCTGGAGCTGCTCGAGTGCTACC 831
consensus_2#1      ------------------------------------------------------------
                                                                               

consensus_2#0      TGTCGCTCAACGCGCGGGAGCACCACGGCGTGATCATGGAGGCGTTCAGGGGCGTCTGGG 891
consensus_2#1      ------------------------------------------------------------
                                                                               

consensus_2#0      TCGAGATCGTCGCTGATGCTGATTGTTGCGTTGGGTTGTGAGCTATATTGATTCTGTTTT 951
consensus_2#1      ------------------------------------------------------------
                                                                               

consensus_2#0      TGTATAGTTGGATTGATCGAATCGATTGAGCTGTAAATGGATATATTGTGCCGTTAATTT 1011
consensus_2#1      ------------------------------------------------------------
                                                                               

consensus_2#0      TTGGTGTTAATGAATCAAGC 1031
consensus_2#1      --------------------