cluster # 2000

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Oryza sativa
cluster # 2000 cluster # 2000 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2000#0 length = 694 sequences # 1

consensus_2000#1 length = 214 sequences # 1

consensusID : consensus_2000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATTAACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACCTGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGGCAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCATTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTCGTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGCACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGAATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCACATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGAATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA]

[+] EMBL AU100637             [CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATTAACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACCTGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGGCAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCATTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTCGTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGCACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGAATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCACATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGAATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA]




>consensus_2000#0
CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATT
AACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACC
TGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGG
CAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCA
TTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGA
GATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAG
CTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTC
GTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGC
ACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGA
ATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCA
CATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGA
ATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA

consensusID : consensus_2000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [GAGTAGAAACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT]

[+] EMBL CF331024             [GAGTAGAAACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT]




>consensus_2000#1
GAGTAGAAACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGC
ATGAGATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACA
ATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAAAAA
AAAAAAAACACTGTCATGCCGTTATGTAGCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2000#0      CCCAGTCTGCATCTGCAAAGAAGCAAATGTTCAATCTATTTTGGTGNATCCCAAGGCATT 60
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      AACTACAGCAGAGTCACCTGTAGCAATTACGGGAGGTCCGCAATCTAGTTTGGAGCAACC 120
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      TGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATCCAGAGG 180
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      CAAATCTCGGAGGCGCAGGTAAATTGTCGGCACACAAGAGCCTAGATGAGCAAACTGTCA 240
consensus_2000#1      -----------------------------------------------GAGTAGA------ 7
                                                                     *** * *      

consensus_2000#0      TTTGGCGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGA 300
consensus_2000#1      ---AACGTTGTGGTCAGTGGAGATTTGACATTTGTGGTGGTAAGATTTGATTTTGCATGA 64
                           *******************************************************

consensus_2000#0      GATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAG 360
consensus_2000#1      GATAAAGGCTGTCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGATAGACAATAG 124
                      *********** ************************************************

consensus_2000#0      CTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACGTTGTTGTTC 420
consensus_2000#1      CTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAAAAAA------- 177
                      *************************************************           

consensus_2000#0      GTTTCCAAGGATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGC 480
consensus_2000#1      ------AAAAAAAAAAACACTGTCATGCCGTTATGTAGCGTAT----------------- 214
                            **  *   *         *    ***   * * ** *                 

consensus_2000#0      ACCAGAGACCAAATGTTGTAGTTCAGTGACACCAGTGGTTCGGACCATCAAGGGGTAGGA 540
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      ATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTTTTGTATCTGCA 600
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      CATATGTGGAGGTCCTATTCATGATTGTTTAGAGGGCTTGTGCAGCAGTTGTGCGCCTGA 660
consensus_2000#1      ------------------------------------------------------------
                                                                                  

consensus_2000#0      ATAAAAAGGTGAACAGATCGTGAAATGAAAAAAA 694
consensus_2000#1      ----------------------------------