cluster # 2004

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2004 cluster # 2004 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2004#0 length = 492 sequences # 1

consensus_2004#1 length = 170 sequences # 1

consensusID : consensus_2004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TTTTTTTTTTTTTTTTTAAACACTCATAAGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC]

[+] EMBL CF316454             [TTTTTTTTTTTTTTTTTAAACACTCATAAGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC]




>consensus_2004#0
TTTTTTTTTTTTTTTTTAAACACTCATAAGCACTTAATTAGTAATTAGCATACCACATAT
ATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAG
CTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGC
ATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAG
CAGGCATGGTGAGAAGCTGAAAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGGGGT
GACCGCCATAAAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAAAAGCCGC
CATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGC
CATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGT
AGCCTCCATGGC

consensusID : consensus_2004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTAGGAGAAAAGCTTCTCCAAACCACACTTCACCTC]

[-] EMBL CF331223             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTAGGAGAAAAGCTTCTCCAAACCACACTTCACCTC]




>consensus_2004#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAC
TTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAG
TAAATGAAATCAAAGTAGGAGAAAAGCTTCTCCAAACCACACTTCACCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2004#0      ---------------------------TTTTTTTTTTTTTTTTTAAACACTCATAAGCAC 33
consensus_2004#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAC 60
                                                 *****************      *  *  ****

consensus_2004#0      TTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAG 93
consensus_2004#1      TTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAG 120
                      ************************************************************

consensus_2004#0      TAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTA 153
consensus_2004#1      TAAATGAAATCAAAGTA-GGAGAAAAGCTTCTCCAAACCACACTTCACCTC--------- 170
                      ***************** *********************************         

consensus_2004#0      AGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGC 213
consensus_2004#1      ------------------------------------------------------------
                                                                                  

consensus_2004#0      CAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAAT 273
consensus_2004#1      ------------------------------------------------------------
                                                                                  

consensus_2004#0      GGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGT 333
consensus_2004#1      ------------------------------------------------------------
                                                                                  

consensus_2004#0      GTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCAT 393
consensus_2004#1      ------------------------------------------------------------
                                                                                  

consensus_2004#0      AGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGC 453
consensus_2004#1      ------------------------------------------------------------
                                                                                  

consensus_2004#0      CATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC 492
consensus_2004#1      ---------------------------------------