These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TTTTTTTTTTTTTTTTTAAACACTCATAAGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC] [+] EMBL CF316454 [TTTTTTTTTTTTTTTTTAAACACTCATAAGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTAAGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGCCAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAATGGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGTGTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCATAGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGCCATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC] consensusID : consensus_2004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTAGGAGAAAAGCTTCTCCAAACCACACTTCACCTC] [-] EMBL CF331223 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACTTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAGTAAATGAAATCAAAGTAGGAGAAAAGCTTCTCCAAACCACACTTCACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2004#0 ---------------------------TTTTTTTTTTTTTTTTTAAACACTCATAAGCAC 33 consensus_2004#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAC 60 ***************** * * **** consensus_2004#0 TTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAG 93 consensus_2004#1 TTAATTAGTAATTAGCATACCACATATATATATTGTCATCACTCAGACACACAAGCAGAG 120 ************************************************************ consensus_2004#0 TAAATGAAATCAAAGTATGGAGAAAAGCTTCTCCAAACCACACTTCACCTCTAGAAATTA 153 consensus_2004#1 TAAATGAAATCAAAGTA-GGAGAAAAGCTTCTCCAAACCACACTTCACCTC--------- 170 ***************** ********************************* consensus_2004#0 AGACCTATCCACATATTTGAGTTTAGCATGATCAAACTATATATATATATGTCGCCAAGC 213 consensus_2004#1 ------------------------------------------------------------ consensus_2004#0 CAACATCTATCACTCTCACTTATTGAGCAGGCATGGTGAGAAGCTGAAAGCAGTATTAAT 273 consensus_2004#1 ------------------------------------------------------------ consensus_2004#0 GGTGGCCACCATGGTGACCGCCGGGGTGACCGCCATAAAAGCCGCCGTGGTGGCCGTCGT 333 consensus_2004#1 ------------------------------------------------------------ consensus_2004#0 GTCCGTGATGACCGCCATAAAAGCCGCCATGGTGGTCGTCGTGTCCGTGATGGCCTCCAT 393 consensus_2004#1 ------------------------------------------------------------ consensus_2004#0 AGTATTCGCCGTGATGGCCGCCGTGGCCATGGTGATCGCCGCCAAAGAAGCCGCCACCGC 453 consensus_2004#1 ------------------------------------------------------------ consensus_2004#0 CATGGTGACCGCCGTAACCGTAACCGTAGCCTCCATGGC 492 consensus_2004#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||