cluster # 201

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Oryza sativa
cluster # 201 cluster # 201 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_201#0 length = 504 sequences # 1

consensus_201#1 length = 395 sequences # 1

consensusID : consensus_201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTTTTTTTTAAAGGGGGGAAACCCCCCACCCCCCCTTTTTTTCCCCCATTTTTTATTTCCCCTTTAACCCCTTTTAGGGGCCCAGGGGAAAATTTTTTAAACCCGGGGGAAATTTCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAGGGGAAAAACTTTTTCCCGGGGAAAAATTTTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGAAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCCCCGCCCCCTTTTCAAAGGGAAAAACCTTTGGCCCCCCTTTTTTTAAAAAATCCCCCCCCCCCCGGGAAAAGGGGGTTTCCTTTTGGGGCCCTTTTCCCTTTCCCCAAAAAAAAAACCCCGGGCCCGGGGCTTTGGGGGGGG]

[+] EMBL CF316863             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAATTTTTTTTTAAAGGGGGGAAACCCCCCACCCCCCCTTTTTTTCCCCCATTTTTTATTTCCCCTTTAACCCCTTTTAGGGGCCCAGGGGAAAATTTTTTAAACCCGGGGGAAATTTCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAGGGGAAAAACTTTTTCCCGGGGAAAAATTTTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGAAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCCCCCCCGCCCCCTTTTCAAAGGGAAAAACCTTTGGCCCCCCTTTTTTTAAAAAATCCCCCCCCCCCCGGGAAAAGGGGGTTTCCTTTTGGGGCCCTTTTCCCTTTCCCCAAAAAAAAAACCCCGGGCCCGGGGCTTTGGGGGGGG]




>consensus_201#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTAAAAAAAAATTTTTTTTTAAAGGGGGGAAACCCCCCACCCCCCCTTTTTTT
CCCCCATTTTTTATTTCCCCTTTAACCCCTTTTAGGGGCCCAGGGGAAAATTTTTTAAAC
CCGGGGGAAATTTCCCTTTTAGGGGGGGTAAATTTGGACCTGGGGGAAAAAGGGGAAAAA
CTTTTTCCCGGGGAAAAATTTTTTCCCCCCCAAAATCCCCAAAAAAAAAAAACCCGAAAA
AAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGCCCCCCCCCCCTTTTTTGGGGGGGCC
CCCCCGCCCCCTTTTCAAAGGGAAAAACCTTTGGCCCCCCTTTTTTTAAAAAATCCCCCC
CCCCCCGGGAAAAGGGGGTTTCCTTTTGGGGCCCTTTTCCCTTTCCCCAAAAAAAAAACC
CCGGGCCCGGGGCTTTGGGGGGGG

consensusID : consensus_201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCCCAAAAAAAAACCCCCGGAAAAACCTTGGGGGGTTTTTTCCCCCAAAAAAAAAAAGTTTTCCCCCCTCACCCCCTTTTAGGGGCCCAGGGGAAAATTTTTAAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGGAAATTTGGCCCGGGGGGAAAAAGGGGCAAAAATTTTTCCCGGGGAAAAATGTTTTCCCCCCAAAAATCCCCCCAAAAAAAAAACCGGAAAAAAAAAAGGGAAAACCCGGGGGGCCCAAAAGGGGGCCCCCCCCCCCTTTTTGGGGGGGGCCCCCCCCC]

[+] EMBL CF308815             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCCCAAAAAAAAACCCCCGGAAAAACCTTGGGGGGTTTTTTCCCCCAAAAAAAAAAAGTTTTCCCCCCTCACCCCCTTTTAGGGGCCCAGGGGAAAATTTTTAAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGGAAATTTGGCCCGGGGGGAAAAAGGGGCAAAAATTTTTCCCGGGGAAAAATGTTTTCCCCCCAAAAATCCCCCCAAAAAAAAAACCGGAAAAAAAAAAGGGAAAACCCGGGGGGCCCAAAAGGGGGCCCCCCCCCCCTTTTTGGGGGGGGCCCCCCCCC]




>consensus_201#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCCCAAAAAAAAACCCCCG
GAAAAACCTTGGGGGGTTTTTTCCCCCAAAAAAAAAAAGTTTTCCCCCCTCACCCCCTTT
TAGGGGCCCAGGGGAAAATTTTTAAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGGAAA
TTTGGCCCGGGGGGAAAAAGGGGCAAAAATTTTTCCCGGGGAAAAATGTTTTCCCCCCAA
AAATCCCCCCAAAAAAAAAACCGGAAAAAAAAAAGGGAAAACCCGGGGGGCCCAAAAGGG
GGCCCCCCCCCCCTTTTTGGGGGGGGCCCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_201#0      --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52
consensus_201#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                             ****************************************************

consensus_201#0      TTTTTTTTTTTTTTTTTAAAAAAAAATTTTTTTTTAAAGGGG-------GGAAACCCCCC 105
consensus_201#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGCCCAAAAAAAAACCCCCG 120
                     *****************         *********   ****         ******** 

consensus_201#0      ACCCCCCCTT-------TTTTTCCCCCATTTTTTA------TTTCCCCTTTAACCCCTTT 152
consensus_201#1      GAAAAACCTTGGGGGGTTTTTTCCCCCAAAAAAAAAAAGTTTTCCCCCCTCACCCCCTTT 180
                           ****       ***********      *      ** **** * * *******

consensus_201#0      TAGGGGCCCAGGGGAAAATTTTTTAAACCCGGGGGAAATTTCCCTTTTAGGGGGGGTAAA 212
consensus_201#1      TAGGGGCCCAGGGGAAAATTTTTAAAACCCGGGGGAAATTCCCCTTTTGGGGGGGGGAAA 240
                     *********************** **************** ******* ******* ***

consensus_201#0      TTTGGACCTGGGGGAAAAAGGGGAAAAACTTTTTCCCGGGGAAAAATTTTTTCCCCCCCA 272
consensus_201#1      TTTGGCCCGGGGGGAAAAAGGGGCAAAAATTTTTCCCGGGGAAAAATGTTTTCCCCCCAA 300
                     ***** ** ************** **** ****************** ********** *

consensus_201#0      AAATCCCCAAAAAAAAAAAACCCGAAAAAAAAAAGGGAAAACCCGGGGGGCCCCAAAGGG 332
consensus_201#1      AAATCCCCCCAAAAAAAAAACCGGAAAAAAAAAAGGGAAAACCCGGGGGGCCCAAAAGGG 360
                     ********  ************ ****************************** ******

consensus_201#0      GGCCCCCCCCCCCTTTTTTGGGGGGGCCCCCCCGCCCCCTTTTCAAAGGGAAAAACCTTT 392
consensus_201#1      GGCCCCCCCCCCCTTTTTGGGGGGGGCCCCCCCCC------------------------- 395
                     ****************** ************** *                         

consensus_201#0      GGCCCCCCTTTTTTTAAAAAATCCCCCCCCCCCCGGGAAAAGGGGGTTTCCTTTTGGGGC 452
consensus_201#1      ------------------------------------------------------------
                                                                                 

consensus_201#0      CCTTTTCCCTTTCCCCAAAAAAAAAACCCCGGGCCCGGGGCTTTGGGGGGGG 504
consensus_201#1      ----------------------------------------------------