cluster # 2010

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2010 cluster # 2010 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2010#0 length = 550 sequences # 1

consensus_2010#1 length = 488 sequences # 1

consensusID : consensus_2010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [GTTCCCCCTTGGCGGCCCTCGCCCGAGACTCTGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCTGTTCCAACGCAACCGGCTTATTACCGGGAAAAA]

[+] EMBL BI813531             [GTTCCCCCTTGGCGGCCCTCGCCCGAGACTCTGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCTGTTCCAACGCAACCGGCTTATTACCGGGAAAAA]




>consensus_2010#0
GTTCCCCCTTGGCGGCCCTCGCCCGAGACTCTGTGCATCAAGCGTCTCGCCGACGGCTAC
AACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCCCGGCCGCTCCATCTTCGTCGACCC
AAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCC
CGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAG
CGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTGACCATCA
CTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAA
AAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGTTTGCTACTGCGTACTTTTGCCTC
ATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTGCATGTGTATCGAAAGGCATCGAC
ATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCTGTTCCAACGCAACCGGCTTATTA
CCGGGAAAAA

consensusID : consensus_2010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTGCGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTACCATCACTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAACAAAAAAAAAA]

[+] EMBL BI812426             [CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTGCGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCATCAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCCGGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTCCCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGGCAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGTATTTCCCGTTCCATTACCATCACTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAACAAAAAAAAAA]




>consensus_2010#1
CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTG
CGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCAT
CAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCC
GGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTC
CCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGG
CAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGT
ATTTCCCGTTCCATTACCATCACTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATAGT
AGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAACAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2010#0      ------------------------------------------------------------
consensus_2010#1      CCACGCCCACAACATGCCCGCAAGGCCGTTCGGCGTGTTCCCCACCGAGGTCTCCGCCTG 60
                                                                                  

consensus_2010#0      ------------------GTTCCCCCTTGGCGGCCCTCG-CCCGAGACTCT---GTGCAT 38
consensus_2010#1      CGAGCCCGTCCGCCCGGCGTCCGCATTGGGCGCGCCTCGGCCCGAGGACCTCTGGTGCAT 120
                                        ** * *  * ****  ***** ******   **   ******

consensus_2010#0      CAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCC-CC 97
consensus_2010#1      CAAGCGTCTCGCCGACGGCTACAACCACGGCCCGCTCGGCGACTGGACCAAGGCGCCGCC 180
                      ********************************************************* **

consensus_2010#0      GGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTC 157
consensus_2010#1      GGCCGCTCCATCTTCGTCGACCCAAGAGAGTTTTAGGAGGATTTTAGCTTTCCGTTTTTC 240
                      ************************************************************

consensus_2010#0      CCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGG 217
consensus_2010#1      CCTAGGCCTTTAGGGTTTTTTCCCGACCGTCCGATCTCCTCCCGCACATCCGACGGCGGG 300
                      ************************************************************

consensus_2010#0      CAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGT 277
consensus_2010#1      CAGTCGCTCCCTAGAACCAGCAGCGTCACCCCAAACATGTGTCACTCTTCATCTCGTCGT 360
                      ************************************************************

consensus_2010#0      ATTTCCCGTTCCATTGACCATCACTTTTTTTTTTAGCTTTTAGGTGTGAATACAGTAATA 337
consensus_2010#1      ATTTCCCGTTCCATT-ACCATCACTTTTTTTTT-AGCTTTTAGGTGTGAATACAGTAATA 418
                      *************** ***************** **************************

consensus_2010#0      GTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACTCGT 397
consensus_2010#1      GTAGTACCTTTTTCCCAGCTAAAAAAATTCAGAAAAGGGAGCTGCTTAACTGTAACAAAC 478
                      ********************************************************    

consensus_2010#0      TTGCTACTGCGTACTTTTGCCTCATTGCCGTTTACAAACATCCTGTGCGCACAGTACTTG 457
consensus_2010#1      AAAAAAAAAA-------------------------------------------------- 488
                           *                                                      

consensus_2010#0      CATGTGTATCGAAAGGCATCGACATGGAATAGACCTGAAGAGGATACATGTCTGTTGGCT 517
consensus_2010#1      ------------------------------------------------------------
                                                                                  

consensus_2010#0      GTTCCAACGCAACCGGCTTATTACCGGGAAAAA 550
consensus_2010#1      ---------------------------------