cluster # 2015

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2015 cluster # 2015 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2015#0 length = 1400 sequences # 1

consensus_2015#1 length = 579 sequences # 1

consensusID : consensus_2015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1400
fasta sequence

                              [CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTTTCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGATGGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTTCGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCACGTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGACACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCCACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGGAGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGTGGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAAGCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGCAGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTTTGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTTTGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAGATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTAGCCTTTGCTTACTGAGATTG]

[+] EMBL AK106307             [CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTTTCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGATGGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTTCGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCACGTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGACACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCCACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGGAGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGTGGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAAGCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGCAGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTTTGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTTTGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAGATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTAGCCTTTGCTTACTGAGATTG]




>consensus_2015#0
CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTT
TCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGAT
GGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTT
CGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGC
GCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCAT
CATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGC
CGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCC
CGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGC
TCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGC
GGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAG
CACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTC
GAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGA
AGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCAC
GTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGA
CACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCC
ACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGG
AGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGT
GGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAA
GCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGC
AGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTT
TGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTT
TGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAG
ATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTA
GCCTTTGCTTACTGAGATTG

consensusID : consensus_2015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGAGAGCAGCAGGGCGCTGGGGTGTCGCGCCAAGCTTATTCCCTTATGAGGTA]

[-] EMBL BU673083             [CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGAGAGCAGCAGGGCGCTGGGGTGTCGCGCCAAGCTTATTCCCTTATGAGGTA]




>consensus_2015#1
CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGCGCAGGCGGCGGCGG
CCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCATCATCCTGTCCATCG
CGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGCCGACGCGTCGTTGG
TGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCCCGCGCCGGCGGTGA
CGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGCTCCCGAGCCCATTC
CCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGCGGAGGAAGCGGAGG
AGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAGCACCGCCGAGGCGG
AGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTCGAGGGAGAAGCCAC
TGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGAAGAGAGCAGCAGGG
CGCTGGGGTGTCGCGCCAAGCTTATTCCCTTATGAGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2015#0      CACGCATATCGCTTTGCTCTGCTTCGCCTTCGCTTCCGCTTCCGATTGCCGTTTCCGCTT 60
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      TCGCCGCGCGAAGACGTAAAGAAGGAGGCGGCGGCGACGGCGGTGGTGGGGTTGAGGGAT 120
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      GGGGTACGCGCGGACGGTGAAGGCGGCGACGGCGGCGGCGGCGGCGGTGCTGGTGGCGTT 180
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      CGGGGTGAGGATGGCGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGC 240
consensus_2015#1      --------------CGGCGCCGGCTGCGGCGGGGTTCGTGGCGGACGAGCTGCCGCGGGC 46
                                    **********************************************

consensus_2015#0      GCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCAT 300
consensus_2015#1      GCAGGCGGCGGCGGCCACGTGGCTGACGCCGCCGTACCTGTACCTCGTCATCAACGCCAT 106
                      ************************************************************

consensus_2015#0      CATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGC 360
consensus_2015#1      CATCCTGTCCATCGCGGCGTCGTCGCGGTTCCAGCCTAACCGCCCGCAGGCCGCCTCCGC 166
                      ************************************************************

consensus_2015#0      CGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCC 420
consensus_2015#1      CGACGCGTCGTTGGTGCGGCCGGCTCCGGTTCCGGTTCCAGTCCCGGTGGTGGCGGTGCC 226
                      ************************************************************

consensus_2015#0      CGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGC 480
consensus_2015#1      CGCGCCGGCGGTGACGATGCCGATGGAGGTGCCCGTTGTGCCGGTGCCGGAGGCGATGGC 286
                      ************************************************************

consensus_2015#0      TCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGC 540
consensus_2015#1      TCCCGAGCCCATTCCCGTGGAGGTGACGGTGCCGGAGGTGGTGAAGACGGCGCCGGAGGC 346
                      ************************************************************

consensus_2015#0      GGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAG 600
consensus_2015#1      GGAGGAAGCGGAGGAGAACTTCACGATCTCGAGGTCGGCATGGACGCCACGGCGGAGGAG 406
                      ************************************************************

consensus_2015#0      CACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTC 660
consensus_2015#1      CACCGCCGAGGCGGAGGCAGAGCATGAGGCGTTGTCCCCCTTCGCGGACCTGACGAACTC 466
                      ************************************************************

consensus_2015#0      GAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGA 720
consensus_2015#1      GAGGGAGAAGCCACTGGTGTCCACTCGATTCGGCCGGAAGCCGGTCAAGGCGAGCCCAGA 526
                      ************************************************************

consensus_2015#0      AGGGAGCAGCAGGGCGCTGGGGGTGTCGCGGCCGCGGAAGGAGCAGACGCTGGAGAGCAC 780
consensus_2015#1      AGAGAGCAGCAGGGCGCTGGGG-TGTCGCGCCAAGCTTATTCCCTTATGAGGTA------ 579
                      ** ******************* ******* *      *    *  * *  * *      

consensus_2015#0      GTGGAAGGCCATCACGGAGGGGCGGGCGCCGCCGCTGGCGCGGCATCTCAAGAAGTCGGA 840
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      CACCTGGGAGACCCGGCCCGGCCGCCGCCAGTCCGGCAGCGGAGGTGGCGAGGACGCGCC 900
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      ACCGCCGGCGACGGCGATGCGGAAGGCGGAGACGTTCAACGAGGCCGCCGGAGGAGGAGG 960
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      AGGAGGGAAGAAAGTGCGGCGGGAGCCGTCGCTGGGGCAGGACGAGCTGAACCGGAGGGT 1020
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      GGAGGCGTTCATCAACAAGTTCAACATGGAGATGCGGCTGCAGCGGCAGGAGTCGCTCAA 1080
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      GCACTACAACGAAATGATCAGCAGAGGCAGCGTCTACTGACGATGCAGAGCAGCAATAGC 1140
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      AGCAAGCAAGAGCTTGCTTTTTTGTTTTGTTTTGTAGTTTTGGCCTTTTTTTTCTTCTTT 1200
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      TGGGCTCCCTTTTTTTTTTTAATTTCTTCCTTCAACTATCAGTTGTGTAAGAAATGGTTT 1260
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      TGTTCAAGGATGATAGTGATAGTACACAAAAGACAAGACTGTTCATATTAGGGGCGACAG 1320
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      ATTAGTGAAGAAAAGAACAACCCAATTTCTATTGGGGTCTTGTGTATTAAATATTAATTA 1380
consensus_2015#1      ------------------------------------------------------------
                                                                                  

consensus_2015#0      GCCTTTGCTTACTGAGATTG 1400
consensus_2015#1      --------------------