These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTTGTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTTCCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCTGCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAAACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCGGCCCCTAAATTCAATTCCCCCTTTAGGGG] [+] EMBL CF317453 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTTGTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTTCCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCTGCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAAACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCGGCCCCTAAATTCAATTCCCCCTTTAGGGG] consensusID : consensus_2017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCTGTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTTCCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCGGCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT] [+] EMBL CF331938 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCTGTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTTCCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCGGCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2017#0 -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 55 consensus_2017#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA 60 *************************************************** *** consensus_2017#0 AGAAAACTAAATTTTTTTCTTTTCGTTGGGTCCAAAAACAGGGCAAATAAATTCAACCTT 115 consensus_2017#1 AGAAAACCAAATTTCTTTCTTTTGGGGGGGCCCAAAAACCGGGGGAAAAAATCCAACCCT 120 ******* ****** ******** * *** ******** *** ** **** ***** * consensus_2017#0 GTTTTTGCCCGGCTTTTATAAAACGGGCGGGGAAAAATCCCGGCCCCCCCCAACAATGTT 175 consensus_2017#1 GTTTTTGCCCGGCTTTTTTAAAACGGGCGGGGAAAAATCCGGGCCCCCCCCAACAAGGTT 180 ***************** ********************** *************** *** consensus_2017#0 CCTTCCACCTCTTCTTTTTTGGGAAACCCCTGACCCCCTAAAGGGGGCAAAATAGGGCCT 235 consensus_2017#1 CCTTCCCCCTCATCTTTTTTGGGAAACCCCGGCCCCCCTAGAGGGGGCAAAATAGGGGCG 240 ****** **** ****************** * ******* **************** * consensus_2017#0 GCCCCAGTTCTTTTTTCCTCCTTTCAAACCCAAAAAAAAAAAACCCTTTCCCCCCCAGAA 295 consensus_2017#1 GCCCCAGTTTTTTTTTCCCCCTTTCAAACCCCGAAAAAAAATACCCTT------------ 288 ********* ******** ************ ******** ****** consensus_2017#0 ACAGCACCAGCACCAAAGCTCCCCCTTCATCCCTTGTAAGGGCCCAAGGGCAAATTCCCG 355 consensus_2017#1 ------------------------------------------------------------ consensus_2017#0 GCCCCTAAATTCAATTCCCCCTTTAGGGG 384 consensus_2017#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||