cluster # 2021

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Oryza sativa
cluster # 2021 cluster # 2021 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2021#0 length = 295 sequences # 1

consensus_2021#1 length = 126 sequences # 1

consensusID : consensus_2021#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTTTATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAAAAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAAAAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG]

[+] EMBL CF321195             [CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTTTATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAAAAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAAAAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG]




>consensus_2021#0
CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTT
TATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAA
AAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAA
AAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG

consensusID : consensus_2021#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTTTTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC]

[+] EMBL CF332044             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTTTTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC]




>consensus_2021#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG
AAAGGGAATTAAACCGGTTTTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGG
GGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2021#0      CTGTCAACGATACGCTAGTAACGGCATGACATTGGTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_2021#1      -----------------------------------------TTTTTTTTTTTTTTTTTTT 19
                                                               *******************

consensus_2021#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATAAACCGGTT 120
consensus_2021#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAGGGAATTAAACCGGTT 79
                      ***************************************      * ** **********

consensus_2021#0      TATTACTTGGTCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAACCCGGAAAATTAAA 180
consensus_2021#1      TTTTTCTTGGCCCCTTAAAACCCTCACCCCCGGGGCCCGGGGGAAAC------------- 126
                      * ** ***** ************************************             

consensus_2021#0      AAATTTTTACCGGGGTAATAAAAGGGGGGCCCGGTCCCTGTTACCAGAAAGGGGCCCCAA 240
consensus_2021#1      ------------------------------------------------------------
                                                                                  

consensus_2021#0      AAACCCCCCCCCCAACCAAACCTCCCCCTTTTTACCCCTTTAACCCCTGGGAAGG 295
consensus_2021#1      -------------------------------------------------------