|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG]
[+] EMBL CB677228 [GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGAGCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGCTCATTAAGAAGTTTTCACATGAAGAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGCATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGATGAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAACAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG]
consensusID : consensus_2025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT]
[+] EMBL BE040783 [CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGAGGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGGGTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGAGCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGGGGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTCCCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGATGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTGCAAATTCAACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAAGTTNTCACATGAAGAGCAGGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2025#0 GCGGAGGCGAAAAGTGGCGCATTATTTTATCCGAGCGAGCGAGTCAGACGCGCACGCGGA 60
consensus_2025#1 ------------------------------------------------------------
consensus_2025#0 GCAGCCGCCTCCGCCGCCGCCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 120
consensus_2025#1 ----CCGCCTCCGCCGCCGGCGACGACGAGGAGGAGGATGGCGACCCCGTTGGCCGACGA 56
*************** ****************************************
consensus_2025#0 GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 180
consensus_2025#1 GGGCTCGATCGCCGCCGCGGTGATGCCGCGCTCGCCTTCTCCACCGGCCGCCGCCGCGGG 116
************************************************************
consensus_2025#0 GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 240
consensus_2025#1 GTCGGCGGCCGAGGCGCCGATGCTGATATTCGTCTACTTCCACAAGGCGATCCGCGCGGA 176
************************************************************
consensus_2025#0 GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 300
consensus_2025#1 GCTGGAGAGGCTGCACGCCGCGGCCGTGCGCCTCGCCACGGAGCGGTCCGGCGACGTGGG 236
************************************************************
consensus_2025#0 GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 360
consensus_2025#1 GGAGCTCGAGAGGCGGTGCCGCTTCCTCTTCTCCGTCTACAGGCACCACTGCGACGCCGA 296
************************************************************
consensus_2025#0 GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 420
consensus_2025#1 GGACGCGGTTATCTTTCCAGCACTTGATATTCGAGTGAAAAATGTAGCAGGCACGTATTC 356
************************************************************
consensus_2025#0 CCTTGAACATAAGGGGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 480
consensus_2025#1 CCTTGAACATAAGGNGGAAAATGATCTGTTTGCACACCTGTTCTCTCTGTTAAAGCTTGA 416
************** *********************************************
consensus_2025#0 TGTGCGGAATGATGATGGTCTTCGGAGGGAACTCGCGTCCTGTACAGGTCTTCCCACTGC 540
consensus_2025#1 TGTGCGGAATGATGATGGTCTTTCGAGGGAACTCGCGTCCTGTACAGGTG--CAAATTCA 474
********************** ************************* * * *
consensus_2025#0 TCATTAAGAAGTTTTCACATGAA-GAGCAAGCTGATTTAGTCTGGCAATTCTTATGCAGC 599
consensus_2025#1 ACGTTTATAACCCAACATATGTCCAAGGAAGGAAAGCAGGTCTTCCACTGCTAATAAGAA 534
* ** * ** ** *** ** *** * **** ** * ** **
consensus_2025#0 ATCCCTGTCAATATGATGGCAGAGTTCCTTCCATGGCTTGCTACTTCTGTTTCATCTGAT 659
consensus_2025#1 GT---TNTCACATGAAGAGCAGGCCT---------------------------------- 557
* * *** * **** *
consensus_2025#0 GAGCACCAAGATATTCTTAACTGCTTACATAAAATAGTTCCCGACGAGAAACTTCTCCAA 719
consensus_2025#1 ------------------------------------------------------------
consensus_2025#0 CAGGTTGTATTTGCGTGGATTGGAGGGGAAGCAGTGAAAACAATATCACATG 771
consensus_2025#1 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||