cluster # 2026

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Oryza sativa
cluster # 2026 cluster # 2026 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2026#0 length = 657 sequences # 1

consensus_2026#1 length = 503 sequences # 1

consensusID : consensus_2026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAACGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAGAAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTGTCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTTCAACGATCGATCCAGCGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGCCGATTTGGCGCCGATATTTCGCGGCCGTGGCTTCAAACTTTCAGTAGCAGAGGTGATTTACCTCTTGCCGATTGCCGTGACTTTTGTCAACGGTGCCTTCCGCACGACAGCGGCAATTGTTTACCTTGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACGGGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAATTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTACTAGGAAAATG]

[+] EMBL CA767462             [CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAACGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAGAAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTGTCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTTCAACGATCGATCCAGCGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGCCGATTTGGCGCCGATATTTCGCGGCCGTGGCTTCAAACTTTCAGTAGCAGAGGTGATTTACCTCTTGCCGATTGCCGTGACTTTTGTCAACGGTGCCTTCCGCACGACAGCGGCAATTGTTTACCTTGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACGGGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAATTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTACTAGGAAAATG]




>consensus_2026#0
CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAA
CGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAG
AAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTG
TCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTT
CAACGATCGATCCAGCGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGCC
GATTTGGCGCCGATATTTCGCGGCCGTGGCTTCAAACTTTCAGTAGCAGAGGTGATTTAC
CTCTTGCCGATTGCCGTGACTTTTGTCAACGGTGCCTTCCGCACGACAGCGGCAATTGTT
TACCTTGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACGGGCACGGAATACGT
ACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAATTTTATTGGAAGCA
CCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAA
AAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTACTAGGAAAATG

consensusID : consensus_2026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTTTTTTCTCCGATTAATGTGAGAATTTCTAGACCTGAAACCAACTGGAGGCTTTTTTTCTATTCCTTTAATAAGTTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAAGATCCATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGAATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTTTTAACTGTTTAATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCATTTTATTGGAAGCACCTGCAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTACTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA]

[+] EMBL BI812305             [CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTTTTTTCTCCGATTAATGTGAGAATTTCTAGACCTGAAACCAACTGGAGGCTTTTTTTCTATTCCTTTAATAAGTTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAAGATCCATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGAATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTTTTAACTGTTTAATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCATTTTATTGGAAGCACCTGCAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTACTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA]




>consensus_2026#1
CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTTTTTTCTCCGATTAATGTGA
GAATTTCTAGACCTGAAACCAACTGGAGGCTTTTTTTCTATTCCTTTAATAAGTTAATAG
ATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAAGATCCATTTTCA
AAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGAATTGTCCT
TTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTTTTAACTGT
TTAATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCATTTTATTGG
AAGCACCTGCAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGTTTCAGTACTT
GTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTACTAGGAAAAC
GGTTTTTTAAGCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2026#0      CTTCGAAACAGTTCATCGATGTCATACATGAAAACTGGAAAAAAAGATGGCAGCAGGCAA 60
consensus_2026#1      ------------------------------------------------------------
                                                                                  

consensus_2026#0      CGCCGATGTATACAACAGAAGAGCTAGATCGTCTTCAACTTCAAGTGAAAATATGTATAG 120
consensus_2026#1      ------------------------------------------------------------
                                                                                  

consensus_2026#0      AAATGGCGTTACAGTGTGTGGAGCCTGAGCCACTGAAAAGGCCTACCATGCTGGAGGTTG 180
consensus_2026#1      ------------------------------------------------------------
                                                                                  

consensus_2026#0      TCAGCAGACTAGATGATATGTTCCAGAACAGGTCATCACCGCCGTTGTTCTCAACTTCTT 240
consensus_2026#1      -CAACTATTTCTAAGGTTTATTTCTATATAGACTCTGATCTT--TTTTCTCCGATTAATG 57
                       ** *    *  * * * * ** *   * **    * * *    ** *   * * *  * 

consensus_2026#0      CAACGATCGATCCAG-CGTCACGCCGATCTCAGGTTTCCGCTGTTGACTCTGTCCAATGC 299
consensus_2026#1      TGAGAATT--TCTAGACCTGAAACCAACTGGAGGCTTTT--TTTCTATTCCTTTAATAAG 113
                        *  **   ** ** * * *  ** *    *** **    * *  * **  *  *    

consensus_2026#0      CGATTTGGCGCCGATATTTCGCGGCCGTGGCT--TCAAACTTTCAGTAGCAGAGGTGATT 357
consensus_2026#1      TTAATAGATGTTTAATCGTCATAGTAATAATAAATTATAATGCTAATAATAAAAA-GATC 172
                        * * *  *   *    **   *   *      * * * *   * **  * *   *** 

consensus_2026#0      TACCTCTTGCCGATTGCCG---------TGACTTTTGTCAACGGTGCC-TTCCGCACGAC 407
consensus_2026#1      CATTTTCAAAAAAAGATCAAAGACAGACTGACACAGATAGATAGTACTACTCCAGATTGA 232
                       *  *       *    *          ****     *  *  ** *   ***  *    

consensus_2026#0      AGCGGCAATTGTTTACCT-TGGCGGTCGTCTCTCTGCTTGCCTCCTTTTTCTAGTGAACG 466
consensus_2026#1      ATTGTCCTTTCTTTCTTTCTTCCACTTTTTTGTTTATTGGATTGATCCTTCATACACGTT 292
                      *  * *  ** ***   * *  *  *  * * * *  * *  *  *  ***         

consensus_2026#0      GGCACGGAATACGTACATGACCGCAGGTCGCTCTCTCCAGTCACTTCAGTCTTTTAGCAA 526
consensus_2026#1      TTAACTGTTTA-ATACATACATGCAGGTCGCTCTCTCCAGTCACTTCAATCTTTTAGCCA 351
                         ** *  **  *****    ************************** ********* *

consensus_2026#0      TTTTATTGGAAGCACCTGCAAATCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGT 586
consensus_2026#1      TTTTATTGGAAGCACCTGCAA-TCGGACATCCGAATTTTGTTGTAAAAATCGAGTGTTGT 410
                      ********************* **************************************

consensus_2026#0      TTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATGTTTCAGACTATCACTA 646
consensus_2026#1      TTCAGTACTTGTAAAAAGAATGTTTCATCACTAGCTTACACATATTTCAGACTATCACTA 470
                      ******************************************* ****************

consensus_2026#0      CTAGGAAAATG---------------------- 657
consensus_2026#1      CTAGGAAAACGGTTTTTTAAGCCAAAAAAAAAA 503
                      ********* *