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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2052 fasta sequence
[TACCGCCGCCCCTCTCACCAAATTCGGTCTCCTCGTTGCTCCTCCTCACAAATTAGTTGCGGGAACGGATTCCCCTCGATCTCCTCCAAGAAACCCCTTGAATGCCGAATCAAATCGTGTGGAATCAACGCGGTTTTGAGTTATTATTTTACGGCGAACCTTAACCAATCCACCGCCAAATCCTCTCTGGTCCGAGCCGATTTCCTCAACCTTTGCCTATAAATAGCAGCCCCTGGACCTCCTCTTCCGTTTCCCTCTTCTTCCCGAGCTTTTCCCTAACCCTAGCCGTCTCCCCGCAGTCGCCTTCTCTCTCCAACTCCGGCCGCCGCTCCAGCCGGTAGTAGCCGTCGCCTCCGCCATCTCCGGTCAGTGCCGCCACCTCCCTCCGCTCCGCAAGGTTGATCTCCACCCCGGCCACCGGTTTCCCTCCGCCAAATCCCGCCGGAAGGTTGCCGTCACCGTGAACCAGTGGGTTGTTGCCACGGTTTGGTCTCCAGCCGCGCCGTTCGTCGTCGTCCATCGTCGCCTTGGGTCGCCGCCGCCTCCATTGGATTCACAGAGACGAGCTCTACCCCGTCCACCCCTCCGTTGCCACCGCTCGTCGCCGGAAAGCTGTCGCTGCCGTTGACCAGTACCTCGCCGTCGTCCCGATCTCGTCGCCGGCCATCTCCTTTGCCGCTCATCGCTGCGTAAGTGTTGCGTCGTCGTCATCTCCGTGTGTTGCCGCCAGGTCGTTGTCGCCGTCTCTCCCTCTCCGATCGCTTTGGTTTGCTTGTCGTTTCCGTCGTTGCGAAGGTTCGTGAGTGCGTTGGAAGTGATTCAGAAGATTAAGTGAAGACCGATTATTGCAAGACGCGCGGCGTCGTTGCGTTGTAGGATCGAGGAGGAGTAGCGGGGATGGGGCGGCCACCAATGCCAAGCACGGGGGGCCCGGGTTTCCGGTTCACGCAGGAGGAGGTGGCCGAGATGGAGTCGCTCCTGCGGCATCTCAACGACGGCATCCCGGACGGCTCCTTGATCCAGTCCCTCGCCGACAGGTTCACCGCCTCCGCCGCGCGCGCCGGCAAGGTCGGCGTCCGGTCCAAGCAGGTAATAGCCCGTGTGTCTCCTTTCCGGTGGGGAATTCGATCGCTTATGTCCTTAATTCTGACACGTTGATCCGGGCCGGGGTTGGTGTTGCGCGGGAGGTGTGGTACTGGTTCCAGAACCGGAAGTACTCGCAGCGCTCTAGGAACTCGACCAAGATGCTACCGGCGGCGTCTGGCGACCACAAGTCGGCCTTCGCTCGCTCCTCAGTTCAAAAATCAGTAAAGTATTCTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATGATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTCGATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGCAACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTCTTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTCAAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCATGATGACTCTGAGGAAATTGTTCCACTGAGGAAGATGTGTCGTCGGCCAGAAACTGACTACAGACTTGAGATTCTACATGCTGCTGGAGCAGCAAATGCTGCTAAAGAGGCTGTGGTTGATTCGGTGATTGCTTAGTCACTTCGATCGAAAGGGTAATATAGTTGTCAGGAATTTCCACTCCAAACATAGTGGTTGCTTAATTAGGACCCAATGTGATTGTTGTATCATTGACTTGATTTCTATTGCACAAATTAGGTATGGCACACAAATTTTAGTTTACATATTATGCCAAAAAGTGTTGAAGCGGCTATGGATCGGGTGCCCGATCCGGAGCCAAAAAATTGGGGCCCATACCAGCCATCTAGCGCGCGCAACT]
[+] EMBL AK099692 [TACCGCCGCCCCTCTCACCAAATTCGGTCTCCTCGTTGCTCCTCCTCACAAATTAGTTGCGGGAACGGATTCCCCTCGATCTCCTCCAAGAAACCCCTTGAATGCCGAATCAAATCGTGTGGAATCAACGCGGTTTTGAGTTATTATTTTACGGCGAACCTTAACCAATCCACCGCCAAATCCTCTCTGGTCCGAGCCGATTTCCTCAACCTTTGCCTATAAATAGCAGCCCCTGGACCTCCTCTTCCGTTTCCCTCTTCTTCCCGAGCTTTTCCCTAACCCTAGCCGTCTCCCCGCAGTCGCCTTCTCTCTCCAACTCCGGCCGCCGCTCCAGCCGGTAGTAGCCGTCGCCTCCGCCATCTCCGGTCAGTGCCGCCACCTCCCTCCGCTCCGCAAGGTTGATCTCCACCCCGGCCACCGGTTTCCCTCCGCCAAATCCCGCCGGAAGGTTGCCGTCACCGTGAACCAGTGGGTTGTTGCCACGGTTTGGTCTCCAGCCGCGCCGTTCGTCGTCGTCCATCGTCGCCTTGGGTCGCCGCCGCCTCCATTGGATTCACAGAGACGAGCTCTACCCCGTCCACCCCTCCGTTGCCACCGCTCGTCGCCGGAAAGCTGTCGCTGCCGTTGACCAGTACCTCGCCGTCGTCCCGATCTCGTCGCCGGCCATCTCCTTTGCCGCTCATCGCTGCGTAAGTGTTGCGTCGTCGTCATCTCCGTGTGTTGCCGCCAGGTCGTTGTCGCCGTCTCTCCCTCTCCGATCGCTTTGGTTTGCTTGTCGTTTCCGTCGTTGCGAAGGTTCGTGAGTGCGTTGGAAGTGATTCAGAAGATTAAGTGAAGACCGATTATTGCAAGACGCGCGGCGTCGTTGCGTTGTAGGATCGAGGAGGAGTAGCGGGGATGGGGCGGCCACCAATGCCAAGCACGGGGGGCCCGGGTTTCCGGTTCACGCAGGAGGAGGTGGCCGAGATGGAGTCGCTCCTGCGGCATCTCAACGACGGCATCCCGGACGGCTCCTTGATCCAGTCCCTCGCCGACAGGTTCACCGCCTCCGCCGCGCGCGCCGGCAAGGTCGGCGTCCGGTCCAAGCAGGTAATAGCCCGTGTGTCTCCTTTCCGGTGGGGAATTCGATCGCTTATGTCCTTAATTCTGACACGTTGATCCGGGCCGGGGTTGGTGTTGCGCGGGAGGTGTGGTACTGGTTCCAGAACCGGAAGTACTCGCAGCGCTCTAGGAACTCGACCAAGATGCTACCGGCGGCGTCTGGCGACCACAAGTCGGCCTTCGCTCGCTCCTCAGTTCAAAAATCAGTAAAGTATTCTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATGATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTCGATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGCAACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTCTTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTCAAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCATGATGACTCTGAGGAAATTGTTCCACTGAGGAAGATGTGTCGTCGGCCAGAAACTGACTACAGACTTGAGATTCTACATGCTGCTGGAGCAGCAAATGCTGCTAAAGAGGCTGTGGTTGATTCGGTGATTGCTTAGTCACTTCGATCGAAAGGGTAATATAGTTGTCAGGAATTTCCACTCCAAACATAGTGGTTGCTTAATTAGGACCCAATGTGATTGTTGTATCATTGACTTGATTTCTATTGCACAAATTAGGTATGGCACACAAATTTTAGTTTACATATTATGCCAAAAAGTGTTGAAGCGGCTATGGATCGGGTGCCCGATCCGGAGCCAAAAAATTGGGGCCCATACCAGCCATCTAGCGCGCGCAACT]
consensusID : consensus_203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[AGAAGTCAGTAATGCATCTTAATATAACTACTTATTTAAATAAGATTCAACATCTTTCCCGTGATTTGTTTTTTCTTAGTTTTTGTGTCTCCTTCCGGAGTTTGTTCTTATGATTTTAAAGCGCTAGTTTCTATTTGCCTGGAGATCTTTCCTAAAAATAAAATCCCTGGAGATGCTAGGTTAGAAATTTCCTATGAATTATTTCCCTGTATCGGTTTTCCCCTCTCCGTTGCCTCCTCCAATCTTCAGCATTCTTCTTTATCCTGTGATTGTTTATTTTGAAGTTCAAAAATCAGTAAAGAATTCTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATGATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTCGATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGCAACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTCTTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTCAAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCAT]
[+] EMBL CF306059 [AGAAGTCAGTAATGCATCTTAATATAACTACTTATTTAAATAAGATTCAACATCTTTCCCGTGATTTGTTTTTTCTTAGTTTTTGTGTCTCCTTCCGGAGTTTGTTCTTATGATTTTAAAGCGCTAGTTTCTATTTGCCTGGAGATCTTTCCTAAAAATAAAATCCCTGGAGATGCTAGGTTAGAAATTTCCTATGAATTATTTCCCTGTATCGGTTTTCCCCTCTCCGTTGCCTCCTCCAATCTTCAGCATTCTTCTTTATCCTGTGATTGTTTATTTTGAAGTTCAAAAATCAGTAAAGAATTCTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATGATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTCGATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGCAACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTCTTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTCAAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_203#0 TACCGCCGCCCCTCTCACCAAATTCGGTCTCCTCGTTGCTCCTCCTCACAAATTAGTTGC 60
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GGGAACGGATTCCCCTCGATCTCCTCCAAGAAACCCCTTGAATGCCGAATCAAATCGTGT 120
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GGAATCAACGCGGTTTTGAGTTATTATTTTACGGCGAACCTTAACCAATCCACCGCCAAA 180
consensus_203#1 ------------------------------------------------------------
consensus_203#0 TCCTCTCTGGTCCGAGCCGATTTCCTCAACCTTTGCCTATAAATAGCAGCCCCTGGACCT 240
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CCTCTTCCGTTTCCCTCTTCTTCCCGAGCTTTTCCCTAACCCTAGCCGTCTCCCCGCAGT 300
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CGCCTTCTCTCTCCAACTCCGGCCGCCGCTCCAGCCGGTAGTAGCCGTCGCCTCCGCCAT 360
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CTCCGGTCAGTGCCGCCACCTCCCTCCGCTCCGCAAGGTTGATCTCCACCCCGGCCACCG 420
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GTTTCCCTCCGCCAAATCCCGCCGGAAGGTTGCCGTCACCGTGAACCAGTGGGTTGTTGC 480
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CACGGTTTGGTCTCCAGCCGCGCCGTTCGTCGTCGTCCATCGTCGCCTTGGGTCGCCGCC 540
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GCCTCCATTGGATTCACAGAGACGAGCTCTACCCCGTCCACCCCTCCGTTGCCACCGCTC 600
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GTCGCCGGAAAGCTGTCGCTGCCGTTGACCAGTACCTCGCCGTCGTCCCGATCTCGTCGC 660
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CGGCCATCTCCTTTGCCGCTCATCGCTGCGTAAGTGTTGCGTCGTCGTCATCTCCGTGTG 720
consensus_203#1 ------------------------------------------------------------
consensus_203#0 TTGCCGCCAGGTCGTTGTCGCCGTCTCTCCCTCTCCGATCGCTTTGGTTTGCTTGTCGTT 780
consensus_203#1 ------------------------------------------------------------
consensus_203#0 TCCGTCGTTGCGAAGGTTCGTGAGTGCGTTGGAAGTGATTCAGAAGATTAAGTGAAGACC 840
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GATTATTGCAAGACGCGCGGCGTCGTTGCGTTGTAGGATCGAGGAGGAGTAGCGGGGATG 900
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GGGCGGCCACCAATGCCAAGCACGGGGGGCCCGGGTTTCCGGTTCACGCAGGAGGAGGTG 960
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GCCGAGATGGAGTCGCTCCTGCGGCATCTCAACGACGGCATCCCGGACGGCTCCTTGATC 1020
consensus_203#1 ------------------------------------AGAAGTCAGTAATGCATCTTAATA 24
* * * * * ** *** **
consensus_203#0 CAGTCCCTCGCCGACA---GGTTCACCGCCTCCGCCGCGCGCGCCGGCAAGGTCGGCGTC 1077
consensus_203#1 TAACTACTTATTTAAATAAGATTCAACATCTTTCCCGTGATTTGTTTTTTCTTAGTTTTT 84
* ** * * * **** * ** *** * * * *
consensus_203#0 CGGTCCAAGCAGGTAATAGCCCGTGTGTCTCCTTTCCGGTGGGGAATTCGATCGCTTATG 1137
consensus_203#1 GTGTCT---CCTTCCGGAGTTTGTTCTTATGATTT----TAAAGCGCTAGTTTCTATTTG 137
*** * ** ** * * *** * * * * * * **
consensus_203#0 TCCTTAATTCTGACACGTTGATCCGGGCCGGGGTTGGTGTTGCGCGGGAGGTGTGGTACT 1197
consensus_203#1 CCTGGAGATCTTTCCTAAAAATAAAATCCCTGGA-GATGCTAGGTTAGAAATTTCCTATG 196
* * *** * ** ** ** * ** * * ** * * **
consensus_203#0 GGTTCCAGAACCGGAAGTACTCGCAGCGCTCTAGGAACTCGACCAAGATGCTACCGGCGG 1257
consensus_203#1 AATTATTTCCCTGTATCGGTTTTCCCCTCTCCGTTGCCTCCTCCAA-------TCTTCAG 249
** * * * * * * *** *** **** * * *
consensus_203#0 CGTCTGGCGACCACAAGTCGGCCTTCGCTCGCTCCTCAGTTCAAAAATCAGTAAAGTATT 1317
consensus_203#1 CATTC----TTCTTTATCCTGTGATTGTTTATTTTGAAGTTCAAAAATCAGTAAAGAATT 305
* * * * * * * * * * ******************* ***
consensus_203#0 CTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATG 1377
consensus_203#1 CTTTGGAGGGTGGCCAGCTCGAGTTTGAGGCAAAGTCCGTTAGAGATGGTGCATGGTATG 365
************************************************************
consensus_203#0 ATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTC 1437
consensus_203#1 ATGTTGCTGCCTTCCTTTCCCATAGATTGTCCCAGTCTGGTGAACTGGAAGTATGGGTTC 425
************************************************************
consensus_203#0 GATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGC 1497
consensus_203#1 GATTTTCTGGATTTGGAGCTAGGGACGACGAATGGATTGATGTCCGTACATGTGTGCGGC 485
************************************************************
consensus_203#0 AACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTC 1557
consensus_203#1 AACGTTCTCATCCATGTGTGTCAACCGAATGTGCCGCTGTTCTTCCTGGGGACCAAATTC 545
************************************************************
consensus_203#0 TTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTC 1617
consensus_203#1 TTTGCTTCCAGGAAGGCAAACATCAGGCTCTGTATTTTGATGCTCATGTCCTTGATGCTC 605
************************************************************
consensus_203#0 AAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCATG 1677
consensus_203#1 AAAAGCGTAGGCATGATGCAAGAGGTTGTCGTTGCAGATTTCTTGTTTGCTATGATCAT- 664
***********************************************************
consensus_203#0 ATGACTCTGAGGAAATTGTTCCACTGAGGAAGATGTGTCGTCGGCCAGAAACTGACTACA 1737
consensus_203#1 ------------------------------------------------------------
consensus_203#0 GACTTGAGATTCTACATGCTGCTGGAGCAGCAAATGCTGCTAAAGAGGCTGTGGTTGATT 1797
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CGGTGATTGCTTAGTCACTTCGATCGAAAGGGTAATATAGTTGTCAGGAATTTCCACTCC 1857
consensus_203#1 ------------------------------------------------------------
consensus_203#0 AAACATAGTGGTTGCTTAATTAGGACCCAATGTGATTGTTGTATCATTGACTTGATTTCT 1917
consensus_203#1 ------------------------------------------------------------
consensus_203#0 ATTGCACAAATTAGGTATGGCACACAAATTTTAGTTTACATATTATGCCAAAAAGTGTTG 1977
consensus_203#1 ------------------------------------------------------------
consensus_203#0 AAGCGGCTATGGATCGGGTGCCCGATCCGGAGCCAAAAAATTGGGGCCCATACCAGCCAT 2037
consensus_203#1 ------------------------------------------------------------
consensus_203#0 CTAGCGCGCGCAACT 2052
consensus_203#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||