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Oryza sativa
cluster # 2034 cluster # 2034       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2034#0 length = 1686 sequences # 2  

consensusID : consensus_2034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1686
fasta sequence
                              [CACACTCACTGATGAGTGATGACTGATCTATCAACCAAACCAACTCCCAACTCCTCCCTCCCTCCGCCGCGCCACGCCCACCCACGCATCCATCCATCGATCGCAGCCAAATTCTACTCGAGCTGAGCGCTCCGAGCTCTCTCGATCGATCATGGCGTCCTCCCCGCGCCATTCCACCCACCACCCCACCTTGCTCCTCCGCCGCCACTACCCCAACTTCTGCGCCCTCGCCCCCCTCCGCCCGACCAGGCAACTCCCCAGCCTTCCCCAGCAGCAGCTGCAGCAGAAGCAGCACGTTGGCCATGATCCGTCGCCGTCGGAGCCCACCACCGCGGCCGCCTCGCCGGCGACGGCGGCGGCGGCGGGGGCGCTGCGTGTGGGGATCGTCGGGTTCGGCAACTTCGGGCAGTTCATCGCGGGGGGGATCCAGCGGCAGGGGCACGCGGTGCTGGCCACCTCCAGATCCGACTACTCGGGCTACTGCGCCCGCCACGGGATCCGCTTCTTCGCCACCGCCGACGAGCTCTGCGAGGCCGGGCCCGACGTCCTGCTCGTCTGCAGCTCCATCCTCTCCACCGAGGCCGTCGTCCGCGCCATCCCCTTCCGCAAGCTCCGCCCCGGAACCCTCGTCGCCGACGTGCTCTCCGTCAAGCAGTTCCCCCGCAACCTCCTCCTCGAGATCCTCCCTCCGGGGTTCGGGATTGTATGTACGCACCCCATGTTTGGGCCGGAGAGTGGAAAGCATGGCTGGAGTGGGCTACCTTTTGTCTATGACAAGGTCCGTGTTGCCAAGGAAGGGGATCAGGCGGCCAAGTGCGAACAGTTCTTGAGCATCTTTGAGCGGGAGGGATGTAGGATGGTGGAGATGTTGTGCGAAGAGCATGATCGCTATGCCGCGGGAAGTCAGTTCATCACTCACACTATTGGGAGGATTTTGTCACAGCTAAACCTTGAGTCCACACCAATCAACACCAAGGGTTATGAGACCCTTCTGCAACTTACTAAGAACACGATAAGTGATAGTTTCGATCTGTACTATGGGCTTTTCATGTACAATGTGAATGCCACAGAACAGATAGACAACCTGGACAGGGCATTTGAGAAGGTGAAGCAGATGCTCTATGGTAGGCTGCATAATGTACTAAGAAAGCAGATAGAAGAGAGGGTCCCAATCCCGTAGCCCCTTCAGTAAATATCAAATGAAGCCCAGTCCAGTGCTGCTGGGGCCTGGGAGCCTGGGACCCCTCTCTTCTCTCCTGTAAGGTTGTATCCACACAGAAGAAGTTGCACATAT-CCCATAT-CTCTGCTACACCCA--CCCCTACACTTGACAAAACAGAGAATTAGG-CTAATA-CCATGGCAAATAGGTGACAATTGGAAAA-A-CCATCACATATGTGAATAACATGTGGGTCCTAGGTTAAAATATCAATGTCATAGGCAATAATTTTTTCAAACCCTGTTGTGATATTTTCATTGGTACCAAGATACTAATTCTAGATGTCTTTCTCAGTGTTGTGATAGGAGCTGTATGCATTCAATGTTTCTCTTAGGTGTTAGCTAAATATGCAAGGAATAAGATGTAACCATGTCCTCTGTTTTTGTTCTTTCATGAGTTGTAACGAAATTCTTTTGTTCTTTTACACTGAGCATGAAACAAGTTATGATATAAGAGAATGCTTGTTTGAAAAA]

[+] EMBL AK058589             [CACACTCACTGATGAGTGATGACTGATCTATCAACCAAACCAACTCCCAACTCCTCCCTCCCTCCGCCGCGCCACGCCCACCCACGCATCCATCCATCGATCGCAGCCAAATTCTACTCGAGCTGAGCGCTCCGAGCTCTCTCGATCGATCATGGCGTCCTCCCCGCGCCATTCCACCCACCACCCCACCTTGCTCCTCCGCCGCCACTACCCCAACTTCTGCGCCCTCGCCCCCCTCCGCCCGACCAGGCAACTCCCCAGCCTTCCCCAGCAGCAGCTGCAGCAGAAGCAGCACGTTGGCCATGATCCGTCGCCGTCGGAGCCCACCACCGCGGCCGCCTCGCCGGCGACGGCGGCGGCGGCGGGGGCGCTGCGTGTGGGGATCGTCGGGTTCGGCAACTTCGGGCAGTTCATCGCGGGGGGGATCCAGCGGCAGGGGCACGCGGTGCTGGCCACCTCCAGATCCGACTACTCGGGCTACTGCGCCCGCCACGGGATCCGCTTCTTCGCCACCGCCGACGAGCTCTGCGAGGCCGGGCCCGACGTCCTGCTCGTCTGCAGCTCCATCCTCTCCACCGAGGCCGTCGTCCGCGCCATCCCCTTCCGCAAGCTCCGCCCCGGAACCCTCGTCGCCGACGTGCTCTCCGTCAAGCAGTTCCCCCGCAACCTCCTCCTCGAGATCCTCCCTCCGGGGTTCGGGATTGTATGTACGCACCCCATGTTTGGGCCGGAGAGTGGAAAGCATGGCTGGAGTGGGCTACCTTTTGTCTATGACAAGGTCCGTGTTGCCAAGGAAGGGGATCAGGCGGCCAAGTGCGAACAGTTCTTGAGCATCTTTGAGCGGGAGGGATGTAGGATGGTGGAGATGTTGTGCGAAGAGCATGATCGCTATGCCGCGGGAAGTCAGTTCATCACTCACACTATTGGGAGGATTTTGTCACAGCTAAACCTTGAGTCCACACCAATCAACACCAAGGGTTATGAGACCCTTCTGCAACTTACTAAGAACACGATAAGTGATAGTTTCGATCTGTACTATGGGCTTTTCATGTACAATGTGAATGCCACAGAACAGATAGACAACCTGGACAGGGCATTTGAGAAGGTGAAGCAGATGCTCTATGGTAGGCTGCATAATGTACTAAGAAAGCAGATAGAAGAGAGGGTCCCAATCCCGTAGCCCCTTCAGTAAATATCAAATGAAGCCCAGTCCAGTGCTGCTGGGGCCTGGGAGCCTGGGACCCCTCTCTTCTCTCCTGTAAGGTTGTATCCACACAGAAGAAGTTGCACATAT CCCATAT CTCTGCTACACCCA  CCCCTACACTTGACAAAACAGAGAATTAGG CTAATA CCATGGCAAATAGGTGACAATTGGAAAA A CCATCACATATGTGAATAACATGTGGGTCCTAGGTTAAAATATCAATGTCATAGGCAATAATTTTTTCAAACCCTGTTGTGATATTTTCATTGGTACCAAGATACTAATTCTAGATGTCTTTCTCAGTGTTGTGATAGGAGCTGTATGCATTCAATGTTTCTCTTAGGTGTTAGCTAAATATGCAAGGAATAAGATGTAACCATGTCCTCTGTTTTTGTTCTTTCATGAGTTGTAACGAAATTCTTTTGTTCTTTTACACTGAGCATGAAACAAGTTATGATATAAGAGAA               ]
[+] EMBL AU029803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GAAGAAGTTGCACATATCCCCATATCCTCTGCCACACCCACCCCCCTACACTTGACAAAACAGAGAATTAGGCCTAATACCCATGGCAAATAGGTGACAATTGGAAAATACCCATCACATATGTGAATAACATGTGGGTCCTAGGTTAAAATATCAATGTCATAGGCAATAATTTTTTCAAACCCTGTTGTGATATTTTCATTGGTACCAAGATACTAATTCTAGATGTCTTTCTCAGTGTTGTGATAGGAGCTGTATGCATTCAATGTTTCTCTTAGGTGTTAGCTAAATATGCAAGGAATAAGATGTAACCATGTCCTCTGTTTTTGTTCTTTCATGAGTTGTAACGAAATTCTTTTGTTCTTTTACACTGAGCATGAAACAAGTTATGATATAAGAGAATGCTTGTTTGAAAAA]


>consensus_2034#0 CACACTCACTGATGAGTGATGACTGATCTATCAACCAAACCAACTCCCAACTCCTCCCTC CCTCCGCCGCGCCACGCCCACCCACGCATCCATCCATCGATCGCAGCCAAATTCTACTCG AGCTGAGCGCTCCGAGCTCTCTCGATCGATCATGGCGTCCTCCCCGCGCCATTCCACCCA CCACCCCACCTTGCTCCTCCGCCGCCACTACCCCAACTTCTGCGCCCTCGCCCCCCTCCG CCCGACCAGGCAACTCCCCAGCCTTCCCCAGCAGCAGCTGCAGCAGAAGCAGCACGTTGG CCATGATCCGTCGCCGTCGGAGCCCACCACCGCGGCCGCCTCGCCGGCGACGGCGGCGGC GGCGGGGGCGCTGCGTGTGGGGATCGTCGGGTTCGGCAACTTCGGGCAGTTCATCGCGGG GGGGATCCAGCGGCAGGGGCACGCGGTGCTGGCCACCTCCAGATCCGACTACTCGGGCTA CTGCGCCCGCCACGGGATCCGCTTCTTCGCCACCGCCGACGAGCTCTGCGAGGCCGGGCC CGACGTCCTGCTCGTCTGCAGCTCCATCCTCTCCACCGAGGCCGTCGTCCGCGCCATCCC CTTCCGCAAGCTCCGCCCCGGAACCCTCGTCGCCGACGTGCTCTCCGTCAAGCAGTTCCC CCGCAACCTCCTCCTCGAGATCCTCCCTCCGGGGTTCGGGATTGTATGTACGCACCCCAT GTTTGGGCCGGAGAGTGGAAAGCATGGCTGGAGTGGGCTACCTTTTGTCTATGACAAGGT CCGTGTTGCCAAGGAAGGGGATCAGGCGGCCAAGTGCGAACAGTTCTTGAGCATCTTTGA GCGGGAGGGATGTAGGATGGTGGAGATGTTGTGCGAAGAGCATGATCGCTATGCCGCGGG AAGTCAGTTCATCACTCACACTATTGGGAGGATTTTGTCACAGCTAAACCTTGAGTCCAC ACCAATCAACACCAAGGGTTATGAGACCCTTCTGCAACTTACTAAGAACACGATAAGTGA TAGTTTCGATCTGTACTATGGGCTTTTCATGTACAATGTGAATGCCACAGAACAGATAGA CAACCTGGACAGGGCATTTGAGAAGGTGAAGCAGATGCTCTATGGTAGGCTGCATAATGT ACTAAGAAAGCAGATAGAAGAGAGGGTCCCAATCCCGTAGCCCCTTCAGTAAATATCAAA TGAAGCCCAGTCCAGTGCTGCTGGGGCCTGGGAGCCTGGGACCCCTCTCTTCTCTCCTGT AAGGTTGTATCCACACAGAAGAAGTTGCACATATCCCATATCTCTGCTACACCCACCCCT ACACTTGACAAAACAGAGAATTAGGCTAATACCATGGCAAATAGGTGACAATTGGAAAAA CCATCACATATGTGAATAACATGTGGGTCCTAGGTTAAAATATCAATGTCATAGGCAATA ATTTTTTCAAACCCTGTTGTGATATTTTCATTGGTACCAAGATACTAATTCTAGATGTCT TTCTCAGTGTTGTGATAGGAGCTGTATGCATTCAATGTTTCTCTTAGGTGTTAGCTAAAT ATGCAAGGAATAAGATGTAACCATGTCCTCTGTTTTTGTTCTTTCATGAGTTGTAACGAA ATTCTTTTGTTCTTTTACACTGAGCATGAAACAAGTTATGATATAAGAGAATGCTTGTTT GAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)