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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2493 fasta sequence
[ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACATCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAATCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACCCACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTTTGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGGCGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCGAGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGATCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTTTCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGCATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAGATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAGTTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTGTGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCATCTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCATATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAATTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAACAGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTTTCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACACCAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGTGGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTGTTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTACACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTCAATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATATTCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATATTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCCTTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCGAGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAATAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTGCTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGCACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTACCTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCTGATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCTAGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCCTTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTCATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACTCGATTGTAACTTGGTGTATCTTCCATTCTAATG]
[+] EMBL AK067111 [ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACATCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAATCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACCCACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTTTGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGGCGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCTACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCCGCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCGAGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGATCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTTTCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGCATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAGATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAGTTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTGTGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCATCTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCATATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAATTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAACAGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTTTCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACACCAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGTGGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTGTTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTACACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTCAATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATATTCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATATTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCCTTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCGAGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAATAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTGCTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGCACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTACCTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCTGATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCTAGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCCTTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTCATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACTCGATTGTAACTTGGTGTATCTTCCATTCTAATG]
consensusID : consensus_2045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 137 fasta sequence
[CAAGTTACAATCGAGTTCCACAGAACATTACATGATTGGACCGGAAATTAATTAATCGTCTGGACACATTACAAGAATGAACCAATGGAGATTCAACGCACACTTCATCCTATGCGATATTTTCCTCCTATATCAAC]
[+] EMBL BU667304 [CAAGTTACAATCGAGTTCCACAGAACATTACATGATTGGACCGGAAATTAATTAATCGTCTGGACACATTACAAGAATGAACCAATGGAGATTCAACGCACACTTCATCCTATGCGATATTTTCCTCCTATATCAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2045#0 ATTCTCCCGTTTGTTTCCCCACAGAAAAAGGGCGCCAGTTCATCATTCCTCGCCATCACA 60
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCCACCCGAAAAAAAACATGTCTTTTTTACTCTCTTTCTTCTTCTTCCCCCGATCCCAAA 120
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCCCTCCCTGTTCTTGCTGCTGCTCTCGAGTTGAGTGAGTTGACCCTCATCCTCCCCACC 180
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CACCCGAATCTCGCGGAGCCATTTCGCGTTCTTGGAGGAGTTGGGGAGTTTTGGTGTTTT 240
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TGGATCCGAGGAGCGTGAGAGTTCTTGGATCTCGTCGCCCTCCTCCTCCGGCAATGGCGG 300
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CGCTCGCGGAGCACCTGCTGGGTTTGTCGTCGGCGCCGGTGGACTGGGAGGCGGAGTCCT 360
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 ACCCGGGTTACGGCGACTTCGCCGTGCTCCCCTTCCTCGTCGCCTTCTTCCCCGCCGTCC 420
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 GCTTCCTCCTCGACCGCTTCGTCTTCGAGGTAAAATCTGCGCATTGTCTCGTTAGATCCG 480
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 AGATGCCCTTGGGATTGCAGTGTTGAACTGCTGGTGGTAGACTTGGGAGTTGTTAATGGA 540
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCGGTTTGATTATGTTAAGACTGTTAGATAAAAGGCATCTGCTTTTGGGTGTCAGAATTT 600
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCATTTTCAATTATGCAGAGTTCTGGCGTGCAGATTTCATATGCTGTTGAAATTATGAGC 660
consensus_2045#1 ----------------CAAGTTACAAT---CGAGTTCCACAGAACATTA----CATGATT 37
**** * ** ** * ** ****
consensus_2045#0 ATGGTGAAAATGAATGCAGTATCTTTCGATTCGGACTCTGCGCGATTGGATTGATAAAAG 720
consensus_2045#1 GGACCGGAAATTAATTAATCGTCTG--GAC----ACATTACAAGAATGAACCAATGGAGA 91
* **** *** * *** ** ** * * ** ** * ** *
consensus_2045#0 ATGTGTTCATAGTTTGTTTTCATGTGAAGTTGGCTTCTTTTAGTACTAACAGTTAGCAAG 780
consensus_2045#1 TTCAACGCACACTTCATCCT-ATGCGATATT---TTCCTCCTATATCAAC---------- 137
* ** * ** * * *** ** ** *** * ** ***
consensus_2045#0 TTGGTTGTGTGGTTGATTTGTTCCCTTTAATACAAAGGCATAAAGTGTAGGCCTTGATTG 840
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TGTTGAGTTGCTTTTAATTGGAGTACAAGGTGACACGTTTATGGTAACACTTTTAACCAT 900
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CTCTGCAATGATTTGATACTAGCAGGATACAATTGTTGATGCAATGGTTGCATGTGTCAT 960
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 ATTTGTGCAATACCTGTACTCCCTTGCATGCATATATTATAGACTTATCGTCTCGTTCAA 1020
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TTCGCAGTTATTAGCAAGAAGGCTTGTACTTGGAAAGGGGTATGACAAACTTGCTGAAAC 1080
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 AGATGAAAGCAGGAAGAAAATTAACAAGTTTAAGGAGTCAGCATGGAAATTCGTCTATTT 1140
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCTTTCTGCAGAACTGCTATCACTGTCTGTAACATACAATGAGCCATGGTTCAAGAACAC 1200
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CAGAAATTTCTGGGTTGGGCCTGGTGAACAGATCTGGCCTGATCAGAAGACAAAGTGAGT 1260
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 GGAAAAAAAATAATCTATACCTGTGAAAAGGTTTCTGTCACACAGAGTTTTTTTTTCCTG 1320
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TTTTCTACCTTATTGCAGACTCAAGCTTAAGGCTGTCTACATGTTTGCTGCTGGATTTTA 1380
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CACATATTCCATCTTCGCTCTTTTGTTCTGGGAAACAAGGCGGTCAGACTTTGGAGTCTC 1440
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 AATGTCTCACCATTTGGCAACTGTTGTTTTGATCGTTCTATCCTATATTTTCAGGTATAT 1500
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TCTGAACAATTTCCCAGATAAGGTAATTGTATGTATGGCATTCCAGCTCCACAAGCTATA 1560
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TTTAAATATTATTGTGTTTTTCGAACAGATTTGCTCGCGTTGGCTCAGTTGTTCTAGCCC 1620
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TTCATGATGCTAGTGATATATTCTTAGAGATTGGGAAGATGTCCAAGTACAGTAGTTGCG 1680
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 AGGGGCTAGCTGTTGCAGCATTTCTTCTTTTTGTGGCTTCATGGATTCTTCTGCGTCTAA 1740
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TAATTTTCCCGTTCTGGATCCTAAGGAGCACAAGGTAAACTCATGCCTGCTTATATGCTG 1800
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CTCTGGCATCTGGTGTTATCTACGCATCTCTAGCCATTTAGCGCTATAATCGAAAAGAGC 1860
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 ACAACGGCACAACTACACTAGAAAGACTTTAAGAAACTTTGTTGATCAATGATCTGGTAC 1920
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCC 1980
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CATATACTACTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTG 2040
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 GTGGGTACTAATATACCGGATGCTAGTCAAGCAAATTCAATCTAGAGGCCGTATCGGCGA 2100
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCTGTGGGCTGAAT 2160
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 GCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCT 2220
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 GATTCCCAGACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCT 2280
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 AGGAGGCTGCTTGCGCTGCCATATACTTTATGAGAAAAAGTTGATCAATGTTTTCCCCCC 2340
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 TTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCATTGGTTCATTC 2400
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 ATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACT 2460
consensus_2045#1 ------------------------------------------------------------
consensus_2045#0 CGATTGTAACTTGGTGTATCTTCCATTCTAATG 2493
consensus_2045#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||