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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 831 fasta sequence
[CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCACCTTGGTACAGAGGAACCAAATTGCAGATTTGCAAATATGGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTGAACATATAACAGTTTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCATAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGACAGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTCAAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTAATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAGTCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAGTCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATACTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTATCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCAGTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATACTCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACTGGAGCTAAA]
[+] EMBL CB634959 [CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCACCTTGGTACAGAGGAACCAAATTGCAGATTTGCAAATATGGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTGAACATATAACAGTTTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCATAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGACAGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTCAAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTAATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAGTCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAGTCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATACTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTATCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCAGTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATACTCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACTGGAGCTAAA]
consensusID : consensus_2052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[ATCAGCATATGGAGCATCTAGCCGGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTTTGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACAACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGCAAAACACAGGTTCCCTCAGTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCCCATCATAACACAAGCAACACACAACACACACNGGCACACCACCATTCAGTTCCATGGGCTCCCACACACCACACACACGTAGCAAGGCCTATCTGCACCAGTCCACTATTCTAGCAAAGTCACCAAACACATTGGCCTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCATCATCATCATCATCA]
[+] EMBL BU667077 [ATCAGCATATGGAGCATCTAGCCGGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTTTGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACAACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGCAAAACACAGGTTCCCTCAGTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCCCATCATAACACAAGCAACACACAACACACACNGGCACACCACCATTCAGTTCCATGGGCTCCCACACACCACACACACGTAGCAAGGCCTATCTGCACCAGTCCACTATTCTAGCAAAGTCACCAAACACATTGGCCTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCATCATCATCATCATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2052#0 ----------CTTTTTTTTAGCCCGGGTTTGCAAAACAATGTGATCTTGCTGGCTGTTTC 50
consensus_2052#1 ATCAGCATATGGAGCATCTAGCC-GGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTC 59
* ***** ** *********************************
consensus_2052#0 TGCCAGTATTTACAGCC-ACCT-TGGTACAGAGGAACCAAATTGCAGATTTGCAA-ATAT 107
consensus_2052#1 TGCCAGTATTTACAGCCCACCTGTGGTCACCAGCAGGCACACCCAACATTGCCAGCATTT 119
***************** **** **** ** * ** * * *** ** ** *
consensus_2052#0 GGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTG---AACATATAACA 164
consensus_2052#1 TGCCAACATCATGGCACATCACTGGTCACCAGTCATGTCTGGCCCAGGCAGCATGTTACA 179
* ** * * * * * ** * * * *** * ***
consensus_2052#0 GT--TTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCA 222
consensus_2052#1 ACCATCGGTTCTGCACACATCATCAACCAGTTTGCATGC---AAAACACAGGTTCCCTCA 236
* * * **** ** * * * ** * **** ***
consensus_2052#0 TAAAAGAAAAAAAAAAGGAACACATAGTTCATGGCTCACAACAAAACTGAGGCATCTGAC 282
consensus_2052#1 GTCAGGCAGCAGCAGGCTGGGGCAGTTTCCCTTTCCC-CATCATAACACAAGCAACACAC 295
* * * * * ** * * * * * ** ** *** * *** * **
consensus_2052#0 AGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATAGAGGGCAAACAAGTC 342
consensus_2052#1 AACACACACNGGCACACCACCATTCAGTTCCAT-GGGCTCCCACACACCACACACACGTA 354
* ** * * ** * * * ***** * **** * * ** *** **
consensus_2052#0 AAATATATATATATATATATATTTTTTCTCACTCAAGGTATGTCATTCATTCACTGTGTA 402
consensus_2052#1 GCA---AGGCCTATCTGCACCAGTCCACT-ATTCTAGCAAAGTCAC-CAAACACATTGGC 409
* * *** * * * ** * ** ** * **** ** *** **
consensus_2052#0 ATCTCCTTTTTCTCGTTGTTGTAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAG 462
consensus_2052#1 CTCTCCCCATCCAAATCGCCCCCATAAGCAGGGGCGCACACACCAAAGTCCAACAATCAT 469
***** * * * * * **** * * *** * *
consensus_2052#0 TCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAG 522
consensus_2052#1 CATCATCATCATCA---------------------------------------------- 483
* * * *
consensus_2052#0 TCGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATA 582
consensus_2052#1 ------------------------------------------------------------
consensus_2052#0 CTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGTCTCTGGCTGTTCCTCGTTA 642
consensus_2052#1 ------------------------------------------------------------
consensus_2052#0 TCTTCAAGGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCA 702
consensus_2052#1 ------------------------------------------------------------
consensus_2052#0 GTTGTGCTTGAAATTTCTGGTTTATCTGTAGTGATCAAATCCTTGAAATCTAGAAGATAC 762
consensus_2052#1 ------------------------------------------------------------
consensus_2052#0 TCTCCTGTCCATTCCCTTCCCCTGCTAAAAGCTAATACAGCTTCNAAAGGTGTAATGACT 822
consensus_2052#1 ------------------------------------------------------------
consensus_2052#0 GGAGCTAAA 831
consensus_2052#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||