cluster # 2056

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Oryza sativa
cluster # 2056 cluster # 2056 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2056#0 length = 345 sequences # 1

consensus_2056#1 length = 284 sequences # 1

consensusID : consensus_2056#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCCGGGGCCTCCAATTTTTTTATTTAAAATTGGCCCCCCCCAAAAAATTTTGGGGGAACAAAATCCCCTTTTTCCTTAAGGTAAAAAAAAAATGGGGGGAAAAAAAACAAAAGCCAAAGCCGGGGGGGTAAATTAAAAAAACGTGAACCAACGGGGGACCCCCCAAAAAAGGGGGGGAAACTTTTTCAATTCAAAAAGAACCATTTAACCGGGGTTTTTTTGGACAAGAAGGGTTTATTGGCCACAAAATTCTTCAAACCCGGGGGGTTGGGGGGCAAAAAACTTAA]

[+] EMBL CF334349             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAGCCGGGGCCTCCAATTTTTTTATTTAAAATTGGCCCCCCCCAAAAAATTTTGGGGGAACAAAATCCCCTTTTTCCTTAAGGTAAAAAAAAAATGGGGGGAAAAAAAACAAAAGCCAAAGCCGGGGGGGTAAATTAAAAAAACGTGAACCAACGGGGGACCCCCCAAAAAAGGGGGGGAAACTTTTTCAATTCAAAAAGAACCATTTAACCGGGGTTTTTTTGGACAAGAAGGGTTTATTGGCCACAAAATTCTTCAAACCCGGGGGGTTGGGGGGCAAAAAACTTAA]




>consensus_2056#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAGC
CGGGGCCTCCAATTTTTTTATTTAAAATTGGCCCCCCCCAAAAAATTTTGGGGGAACAAA
ATCCCCTTTTTCCTTAAGGTAAAAAAAAAATGGGGGGAAAAAAAACAAAAGCCAAAGCCG
GGGGGGTAAATTAAAAAAACGTGAACCAACGGGGGACCCCCCAAAAAAGGGGGGGAAACT
TTTTCAATTCAAAAAGAACCATTTAACCGGGGTTTTTTTGGACAAGAAGGGTTTATTGGC
CACAAAATTCTTCAAACCCGGGGGGTTGGGGGGCAAAAAACTTAA

consensusID : consensus_2056#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAAAAAAAAGCCGGGGCCTCCCTTTTTTTTATTTACAAATGCCCCACCCCAAAAAATATAATCGGAACAAAAACCCCTTTTTCCTTAAGTCCAAAAAAAAACAGGGGGAAAAAAAACAAAAACCAAACCCGGGCGGGAAAATTAAAAAAACATGAACAAACTGGGGACCCCCCAAAAAAGGGGGGGAAACTTTTTCAATTCAAAATGAACAATTTAACCAG]

[+] EMBL CF302656             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAAAAAAAAGCCGGGGCCTCCCTTTTTTTTATTTACAAATGCCCCACCCCAAAAAATATAATCGGAACAAAAACCCCTTTTTCCTTAAGTCCAAAAAAAAACAGGGGGAAAAAAAACAAAAACCAAACCCGGGCGGGAAAATTAAAAAAACATGAACAAACTGGGGACCCCCCAAAAAAGGGGGGGAAACTTTTTCAATTCAAAATGAACAATTTAACCAG]




>consensus_2056#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA
AAAAAAAAAAAAGCCGGGGCCTCCCTTTTTTTTATTTACAAATGCCCCACCCCAAAAAAT
ATAATCGGAACAAAAACCCCTTTTTCCTTAAGTCCAAAAAAAAACAGGGGGAAAAAAAAC
AAAAACCAAACCCGGGCGGGAAAATTAAAAAAACATGAACAAACTGGGGACCCCCCAAAA
AAGGGGGGGAAACTTTTTCAATTCAAAATGAACAATTTAACCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2056#0      ----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---- 46
consensus_2056#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA 60
                                **********************************************    

consensus_2056#0      AAAAAAAAAAAAGCCGGGGCCTCCAATTTTTTTATTTAAAATTGGCCCCCCCCAAAAAAT 106
consensus_2056#1      AAAAAAAAAAAAGCCGGGGCCTCCCTTTTTTTTATTTACAAATGCCCCACCCCAAAAAAT 120
                      ************************  ************ ** ** *** ***********

consensus_2056#0      TTTGGGGGAACAAAATCCCCTTTTTCCTTAAGGTAAAAAAAAAATGGGGGGAAAAAAAAC 166
consensus_2056#1      ATAATCGGAACAAAAACCCCTTTTTCCTTAAGTCCAAAAAAAAACAGGGGGAAAAAAAAC 180
                       *    ********* ****************   *********  **************

consensus_2056#0      AAAAGCCAAAGCCGGGGGGGTAAATTAAAAAAACGTGAACCAACGGGGGACCCCCCAAAA 226
consensus_2056#1      AAAAACCAAACCCGGGCGGGAAAATTAAAAAAACATGAACAAACTGGGGACCCCCCAAAA 240
                      **** ***** ***** *** ************* ***** *** ***************

consensus_2056#0      AAGGGGGGGAAACTTTTTCAATTCAAAAAGAACCATTTAACCGGGGTTTTTTTGGACAAG 286
consensus_2056#1      AAGGGGGGGAAACTTTTTCAATTCAAAATGAACAATTTAACCAG---------------- 284
                      **************************** **** ******** *                

consensus_2056#0      AAGGGTTTATTGGCCACAAAATTCTTCAAACCCGGGGGGTTGGGGGGCAAAAAACTTAA 345
consensus_2056#1      -----------------------------------------------------------