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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2031 fasta sequence
[CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCCTTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAGTTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTTGAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAACTTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTTCAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACACTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCAATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTTCAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGCTGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGCTTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTGAGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACTCCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACAGTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCGTAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTTAGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTTCAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCTTTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCATCCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT]
[+] EMBL AK107561 [CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCCTTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAGTTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTTGAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAACTTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTTCAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACACTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCAATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTTCAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGCTGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGCTTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTGAGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACTCCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACAGTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCGTAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTTAGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTTCAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCTTTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCATCCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT]
consensusID : consensus_206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 958 fasta sequence
[TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCATGTATTGCTG]
[+] EMBL AK067336 [TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTCCGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCTGCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCGACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCTTCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGTGATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAGGAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACCTCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGCCGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCGCCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGGAGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAAGAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTCTGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTGGCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATAATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCATGTATTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_206#0 -CACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTC 59
consensus_206#1 TCACCGCCGCATCCTCCTCCGCCGCATCTCCCCTCCTCCCGTCGCCTCCCCAGCAACCTC 60
***********************************************************
consensus_206#0 CGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCT 119
consensus_206#1 CGCCGCCGCCGCCACGACGACGAGCCTCCGAGTCCGACCACCGGCAATGGCGCCAACCCT 120
************************************************************
consensus_206#0 GCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCG 179
consensus_206#1 GCCTTCCGCACGCCGCACCTCCGCACCGCCTACCGCAAGCCGGTGCCACCCGTGGCGGCG 180
************************************************************
consensus_206#0 ACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCT 239
consensus_206#1 ACGGGGGAGGGCGAGGCGGTCCTCGCCGCCGCTCCTCACCTTCCTCTTCCCCATCGGCCT 240
************************************************************
consensus_206#0 TCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGT 299
consensus_206#1 TCTCCCCGATCGCCTCCCTCGTCCAACTACTCCTCCCTTCCAGAGAAGCGCTGCCACTGT 300
************************************************************
consensus_206#0 GATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAG 359
consensus_206#1 GATCCTTTTCCAGACGCGAGCTCGAAGGCGCTGGTTGCCCCCAAGCTCGAAGAGGTCGAG 360
************************************************************
consensus_206#0 GAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACC 419
consensus_206#1 GAGGTGGTTAGGTTTTGCGCCGCCGAGCTCAGCGAAGAGGCCAAGGAGATGAGGCACACC 420
************************************************************
consensus_206#0 TCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGC 479
consensus_206#1 TCCTCCCCCTCCCCCTTTTCTCCGGTTGGTGGTCAGGCTTTGGGCTGTTCGATCTGGCGC 480
************************************************************
consensus_206#0 CGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCG 539
consensus_206#1 CGCTGAGCTCAGCACGATGAAGGCCGAGGAGGCGAGGCGCACCTCCACCGTTGCCCCTCG 540
************************************************************
consensus_206#0 CCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGG 599
consensus_206#1 CCTCCCCATCTTCCTCTCCCTGCCCGATCTGGCCCGAGGACTCGAGGAGTGGAGAGGGGG 600
************************************************************
consensus_206#0 AGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAA 659
consensus_206#1 AGGAGCCACGGTGATGTTGTGGTCGCTCGCCGAGTCGCCGTTGTCTGCAGCTTCTGGAAA 660
************************************************************
consensus_206#0 GAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTGCCC 719
consensus_206#1 GAAATCAAGATCTTGGATTATTGCCTTAAGCGAGGAAAAGGGAAAAGTATACAGGTC--- 717
********************************************************
consensus_206#0 TTGCATGACTTTGCTTGTTTGTACAGGACATCATATAGCCTATCTCCCTTATCATGGTAG 779
consensus_206#1 -----TGATCTTTGTTGATCTTGCACT-TACCTTGGTGGTTACATGCATT-TTGGGGT-G 769
*** ** *** * * ** * * * * ** * * ** * *** *
consensus_206#0 TTTGACTGGTTGTAAGGATCTTAATTAGTTATATCCAATTTACAGATTTATTGATTATTT 839
consensus_206#1 TGCCTTTGGCGATTTTGAACAGGCCTAGATATATT-GCTTTGCTATGTTGACGTTTATTA 828
* *** * ** * *** ***** *** * ** * *****
consensus_206#0 GAACAACTAGGGCAATTTGTCCTGTTACTACAAATTTTAGAGCAATTTTTTGTGTATAAC 899
consensus_206#1 GAGTAGATAATTGTATTTCTCGTAATG-TGGAAATGGCAAAGA------TTATGTATTGC 881
** * ** **** ** * * * **** * ** ** ***** *
consensus_206#0 TTTTTAATCTCCAAAAACATGCCTTAAGCTGACTATATAAAAGTTTAGTTGGTGAAAGTT 959
consensus_206#1 TACAAAATTGTATAGTTGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGC 941
* *** * * * * * ** ** ** * **** *
consensus_206#0 CAGTTTAGTTTGGAACTTTGGAGTACCATTTATCTTGAAACATAGAGGAAGTGCATGACA 1019
consensus_206#1 AAGATCA---TGTATTGCTG---------------------------------------- 958
** * * ** * **
consensus_206#0 CTGAATATATATTAATGCAAAAGGACTGTTTGAGTGAGGTAATAAATGAGAAATAGTCCA 1079
consensus_206#1 ------------------------------------------------------------
consensus_206#0 ATAAAGAACATATCAACACTAATTAGATGATGCAGTAGTAGGAAACATATATGATGATTT 1139
consensus_206#1 ------------------------------------------------------------
consensus_206#0 CAGTCATGTGCTTATGGTTTTATCCACCATCTACTTTTTTTAATCTTTTATTCATACTGC 1199
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TGCTTAATTAGTGGATGCAATACTAGAATGGAAATGTATGGCGTGAAACTTCTAGCCCGC 1259
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TTTTGCTTTTATTCTGAATGTAGCTGCCAAGCTAGTCTTCAGTATTTGCAGTACTCATTG 1319
consensus_206#1 ------------------------------------------------------------
consensus_206#0 AGCTTTGATTTGGTCCTCAGTTAGTGTTAATACTTTTGCCCCTTCTACAACTTATTTACT 1379
consensus_206#1 ------------------------------------------------------------
consensus_206#0 CCGCATCTCTCTCTTTCTGTTTTGGGCACAGGAGAAAATATTAGTTCTCTGAAGTAGACA 1439
consensus_206#1 ------------------------------------------------------------
consensus_206#0 GTGTGTTCCTTAATAAATATCAGGGGTCTCATTAGTTGCCCAAAGGCTTATTATAAGCCG 1499
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TAACGGTTTATTAGCGACTAGAAAATAATTTGTGTCTAAAAATTTTATATATGTGTTGTT 1559
consensus_206#1 ------------------------------------------------------------
consensus_206#0 AGTGACTTAAAAGGCAATGCTGAAAAAAAAACTACGTTGAAAATATCTCAAAATCAACTT 1619
consensus_206#1 ------------------------------------------------------------
consensus_206#0 CAAAATTAAGTTTCAAAATTCAAATGTTGGCTTTGGCTTTTTATGCCAACCGATGTGGCT 1679
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TTGGCATACCTTTCAGTTAGTAGCTAATGACAGTCTTTGATAGCATATATTGCTTTTCAT 1739
consensus_206#1 ------------------------------------------------------------
consensus_206#0 CCAGTATTCATGGCATTCAATATTATTATCTGATAATGTAAGTCGATCATTTTGCAGGTC 1799
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TGATCTTTGTTGATCTTGCACTTACCTTGGTGGTTACATGCATTTTGGGGTGTGCCTTTG 1859
consensus_206#1 ------------------------------------------------------------
consensus_206#0 GCGATTTTGAACAGGCCTAGATATATTGCTTTGCTATGTTGACGTTTATTAGAGTAGATA 1919
consensus_206#1 ------------------------------------------------------------
consensus_206#0 ATTGTATTTCTCGTAATGTGGAAATGGCAAAGATTATGTATTGCTACAAAATTGTATAGT 1979
consensus_206#1 ------------------------------------------------------------
consensus_206#0 TGCTCTTCCCAATTCCATGTACAAGGCATTTCTCATTGAATGGCAAGATCAT 2031
consensus_206#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||