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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATATAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTATCAAAAACCTTGAGAGATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCATAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGATATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTAGTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACACATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTATAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAAGTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCAAGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCCTCAAAAATGGGNATAACAGCTA]
[+] EMBL CA764739 [GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATATAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTATCAAAAACCTTGAGAGATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCATAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGATATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTAGTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACACATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTATAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAAGTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCAAGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCCTCAAAAATGGGNATAACAGCTA]
consensusID : consensus_2064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TTTTTTATCGAAATATATAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTATCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACATTAACTCCCTGTATCCTGACCTGGAAGTTTCTTCCCAGTGTTCTTATCAGCAAGTTTGTTCCCGAGTAGTGTAAGGATGTGAAAATGCGCCGGAGCATTAAATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAGGTAAGAAGCTTGGTGTTTTCCGCAATGCAGCTTCAGCTTCTTC]
[-] EMBL BI812236 [TTTTTTATCGAAATATATAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACAACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTCAGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTATCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCTTGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACATTAACTCCCTGTATCCTGACCTGGAAGTTTCTTCCCAGTGTTCTTATCAGCAAGTTTGTTCCCGAGTAGTGTAAGGATGTGAAAATGCGCCGGAGCATTAAATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAGGTAAGAAGCTTGGTGTTTTCCGCAATGCAGCTTCAGCTTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2064#0 GCACAGAAACTATCTTAAATTTGAGGTTTACACAATGCTAATTCTCAGTATCGAAATATA 60
consensus_2064#1 -------------------------------------------TTTTTTATCGAAATATA 17
* ************
consensus_2064#0 TAGTTCTAGTGTTAACCNAAAACGACGGCCAACATCACGAAG-TGCTCTGCTTCATCACA 119
consensus_2064#1 TAGTTATAGTGTTAACCAAAAACGACGGCCAACATCACGAAGGTGCTCTGCTTCATCACA 77
***** *********** ************************ *****************
consensus_2064#0 ACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTC 179
consensus_2064#1 ACTACTAAGAACGTATACATGAGCACATGACACCAGGATCTGAGTGCACCAACAATTTTC 137
************************************************************
consensus_2064#0 AGGAGTTCCAGATTATCCTTACAGAAAAATCAACCTATTGCTGCTGAAAGCCTAGAACTA 239
consensus_2064#1 AGGAGTTCCAGATTATCCTTACAAAAAAATCAACCTATGGCTGCTGAAAGCCTAGTACTA 197
*********************** ************** **************** ****
consensus_2064#0 TCAAAAACCTTGAGAGATGCA----ACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCT 295
consensus_2064#1 TCAAAAGCCTTGAGAGATGCATGCAACTGACGGGGCACTGTTAGGATGTTGTCCGTGGCT 257
****** ************** ***********************************
consensus_2064#0 TGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGCATAAGAGAAGCCATTTCA 355
consensus_2064#1 TGATGCTTACTCTCTGGTGGCTCAACTATCCAAAATTTCTGATATATGCACACGATTACA 317
***************************************** * * * *** **
consensus_2064#0 TAAACCACAATCATAGGAGCAATTGAAGNCATCTTTAAAAATATTCTAAGGGATTTTTGA 415
consensus_2064#1 TTAACTCC--CTGTATCCTGACCTGGAAGTTTCTTCCCAG-TGTTCT-------TATCAG 367
* *** * ** * ** * **** * * **** * *
consensus_2064#0 TATTTTCCAGGAAGTACTCCTGATATCGTCTACATATATCACTGTATATTCCCCATATTA 475
consensus_2064#1 CAAGTT--------TGTTCCCGA-GTAGTGTAAGGATGT----GAAAATGCGCCGGAGCA 414
* ** * *** ** * ** ** ** * * * ** * ** * *
consensus_2064#0 GTTTTACAATATATTATTAGTGACTCCACAAAAGAAGTGTCCCAAATTCCAAAAACACAC 535
consensus_2064#1 ---TTA-AATTTCTGTTTAATGATTCCTTCCACACGATGAACTGTAGTATAAAAG-GTAA 469
*** *** * * *** *** *** * ** * * * **** *
consensus_2064#0 ATCAGACGGTACTCACATGCAAAACTATTTGAACGCCACTAGGCCATTCAGGAGAAGCTA 595
consensus_2064#1 GAAGCTTGGTGTTTTC-CGCAATGCAGCTTCAGCTTCTTC-------------------- 508
*** * * **** * ** * * *
consensus_2064#0 TAACTTCTTNCAACAGTCGTTAAAACCGNGCCTAAATAAACAATTGGGGAGATATGAAAA 655
consensus_2064#1 ------------------------------------------------------------
consensus_2064#0 GTGCAGTAGAGCAACAAGGATGCTAGAANTATCATGAGNTGATAATGCATGATTAGTCCA 715
consensus_2064#1 ------------------------------------------------------------
consensus_2064#0 AGNTCATGNCCAATATATAATATTTACCATCAGCTGGATTTCAAGGAGTAAACTAAGTCC 775
consensus_2064#1 ------------------------------------------------------------
consensus_2064#0 TCAAAAATGGGNATAACAGCTA 797
consensus_2064#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||