These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [GCTCGTCTGCTGCTGACTAGTGCCCTCGCCTCTACATCTGGTTTATACAGCTATCACTACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATGCTGTCGCCGACTAGTGCTTTTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTTCACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCTTCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAGGCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAATAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTAATCAAAGAGTCNGGGGCTACACAAATACNA] [+] EMBL BU099174 [GCTCGTCTGCTGCTGACTAGTGCCCTCGCCTCTACATCTGGTTTATACAGCTATCACTACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATGCTGTCGCCGACTAGTGCTTTTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTTCACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCTTCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAGGCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAATAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTAATCAAAGAGTCNGGGGCTACACAAATACNA] consensusID : consensus_2067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTTACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTGGCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGGTACGTCGCCGTCACTGCTAATAGGCGTCATCATCTTCAACGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTTTTATCTTCACCGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTTCACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTTTCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTGGCTCTCCCATATTCAGGATTTCTATTTG] [-] EMBL CA752592 [CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTTACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTGGCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGGTACGTCGCCGTCACTGCTAATAGGCGTCATCATCTTCAACGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTTTTATCTTCACCGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTTCACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTTTCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGACGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTGGCTCTCCCATATTCAGGATTTCTATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2067#0 ------------------------------------------------------------ consensus_2067#1 CCCCNGACTGGTGTTTCTGCCTGCACGGCTGGCCTATTATGCCGCGGTTGTTGGGCGTTT 60 consensus_2067#0 ------------------------------------------------------------ consensus_2067#1 ACGTCTTCACCGACCGGCCGCCTCGCCACCGCCGACTGGTGTTTCTGCCTGCACAAGCTG 120 consensus_2067#0 GCTCGTC-TGCTGCTGACTAGTGCCCTCGCCTCTACAT-CTGGTTTATACAGCTATCACT 58 consensus_2067#1 GCCTGTTATGACGCCGACTGATGCTATCTTCTTCACGGGCTGG--TACGTCGCCGTCACT 178 ** ** ** ** **** *** ** ** ** **** ** ** ***** consensus_2067#0 ACTGATGAACATCATCGTCTTCCGTCGCCGACTGGTTATG-CTGTCGCCGACTAGTGCTT 117 consensus_2067#1 GCTAATAGGCGTCATCATCTTCAA-CGCAAGCTATCTACGTCTGCCGCCGACTGGTGCTT 237 ** ** * ***** ***** *** ** ** * *** ******** ****** consensus_2067#0 TTATTTTCACAACTGCGCGTCTTCACTACCAGTTTGCTTCTGTTGCCGACGACTCGTGTT 177 consensus_2067#1 TTATCTTCAC---------------CGACCGGTTTGCTTCTATTGCCGCCGACTTGTGTT 282 **** ***** * *** ********** ****** ***** ***** consensus_2067#0 CACTTCATCACGGCAATGCAACTTTGTCATCATGGTAGAGCGACTTCATCTTTATTATCT 237 consensus_2067#1 CACTTCATCATGGCAATGCAACTTTGTTATCATGGTAGAGTGACTTCATCTTTATTATTT 342 ********** **************** ************ ***************** * consensus_2067#0 TCGGCACTGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGA 297 consensus_2067#1 TCGGCACCGGCAAACTCTATTGCTGCTACTTCGCAAGTTTTGCTACTTCACCAACCACGA 402 ******* **************************************************** consensus_2067#0 CGTCTTTGTGAGCCTCGACATCTCGGCATGCGATGCCATGTNATTTTACTACAACAAGAG 357 consensus_2067#1 CGTCTTTGTGAACCTCGACATCTCGGCATGCGATGCCATGTTATTTTACTACAACAAGTG 462 *********** ***************************** **************** * consensus_2067#0 GCTCTCCAACATTCATGATTTCTACTTGGACATCTNCAACACATATCTTCAATCAAGCAA 417 consensus_2067#1 GCTCTCCCATATTCAGGATTTCTATTTG-------------------------------- 490 ******* * ***** ******** *** consensus_2067#0 TAACTATNCGACGACAAGAGGCTACAGTNCTCGACTCTATGTNCAGTTGTTTNCCAACTA 477 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 ATCAAAGAGTCNGGGGCTACACAAATACNA 507 consensus_2067#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||