These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAATTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAAAAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAACAACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAACCGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTTTGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT] [+] EMBL CF335707 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAATTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAAAAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAACAACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAACCGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTTTGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT] consensusID : consensus_2073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAAAGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAAAAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAAACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACCCGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTTTTGGGGGAAAAAACCTAAAAA] [+] EMBL CF336419 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAAAGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAAAAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAAACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACCCGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTTTTGGGGGAAAAAACCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2073#0 -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 55 consensus_2073#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 ******************************************************* consensus_2073#0 TTTTTTTTTTTTTT-----AAAAAAAAAAAACCCGGGGCCTCCCTTTTTTTTTTTTAAAA 110 consensus_2073#1 TTTTTTTTTTTTTTGGGAAAAAAAAAAAAAACGCGGGGCCCCCCTTTTTTTTTTTCCAAA 120 ************** ************* ******* ************** *** consensus_2073#0 TTGCCCCCCCCCAAAAAAATTTAGGGGGAAAAAACCCCCTTTTTCCTTAAAGCAAAAAAA 170 consensus_2073#1 AGGCCCCCCCCCCAAAAAATTTTTGGGGAAAAAACCCCCCTTTTCTTTAAGTCAAAAAAA 180 ********** ********* *************** ***** **** ******** consensus_2073#0 AAACCGGGGGAAAAAAAAAAAAAACCAAGCCCGGGGGGGGAAAATAAAAAAACATAAAAC 230 consensus_2073#1 AAACGGGGGAAAAAAAAAAAAAAACCAAACCCGGGGGGGGAAAACAAAAAAAAAAAAAAA 240 **** **** ****************** *************** ******* * **** consensus_2073#0 AACGGGGGACCCCCCAAAAAGGGGGGGGAAACCTTTTCAATTCAAAAAAAAACATTTAAC 290 consensus_2073#1 ACCGGGGGACCCCCAAAAAAGGGGGGGGAAACCCTTCCTTTCCAAAAGGAACCCTTTACC 300 * ************ ****************** ** * * ***** ** * **** * consensus_2073#0 CGGGGTTTTTTTTAAAAAAAACGGTTTATTTCCCCCAAAATTCTTTAAACCCGGGGGGTT 350 consensus_2073#1 CGGGGTTTTTTTTAACAAAACGGGTTTTTTGCCCCCAAAATTCTTTAAACCCGGGGGGTT 360 *************** **** ***** ** ***************************** consensus_2073#0 TGGGGGGAAAAAACCTTAAAACCCCCCCCCCCCTAACTT 389 consensus_2073#1 TTGGGGGAAAAAACCTAAAAA------------------ 381 * ************** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||