cluster # 208

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Oryza sativa
cluster # 208 cluster # 208 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_208#0 length = 2019 sequences # 1

consensus_208#1 length = 276 sequences # 1

consensusID : consensus_208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2019
fasta sequence

                              [GGCGCACCGCACCATTTCTAAATCACATAGTGCTAAACCCGCCCCCTCTTAATTATATCTCCACTTAGCAAGGTGTGTGGTTGCGAGCTTAAAACGCACCCACGCAGGGCCATGGCGACCGATGGCGGCGTGTTGCAGCTGCACCCCTACGCCATGGCCGCGGCTGCCGTGGCATTGGCTTCGGCGTACATGGTGTGGTTCTGGGCGCTGTCGCGGCGGCTGTCCGGGCCACGGATGTGGCCGCTCGTCGGCAGCCTACCCAGCGTCGTGCTGAACCGGGCGCGGGTGCACGACTGGATCGCCGACAACCTGCGCGCCACGGGTGACGCCGCGACGTACCAGACGTGCATCCTGCCTCTGCCATTCCTGGCGCGGCGGCAGGGGCTGGTGACGGTGACGTGCAACCCGCGGAACCTTGAGCACATCCTGCGCGCGCGCTTCGACAACTACCCCAAGGGCCCCATGTGGCAGGCATCGTTCCACGACCTCCTCGGCCAGGGCATCTTCAACTCCGACGGCGAGACGTGGCTGATCCAGCGAAAGACGGCAGCCCTCGAGTTCACCACCCGGACGTTGCGCCAGGCCATGGCACGCTGGGCCAACCGCTCCATCAAGTACCGCCTGTGGCGTATCCTCGACGACCACTGCAACGCGGCCGCAAGCGTGGACCTCCAGGACCTCCTCCTGCGCCTCACCTTCGATAACATCTGCGGCCTCACCTTCGGCAAGGACCCAGAGACGCTGTCCCCCGGCTTGCCGGAGAACCCCTTCGCCAACGCTTTTGACGAGGCCACCGAGGCGACGATGCAGAGGTTCCTGTTCCCGAGCTTGTTGTGGCGCATCAAGAAGGCGTTCGGTGTCGGCAGCGAGCGGAGCCTCCGCGACAGCCTCGCCGTGGTGGACCGTCACATGACGGAGACCATCGCGGCACGCAAGGCGACGCCGTCGGACGACCTGCTGTCCCGGTTCATGAAGAAGCGCGACAGCAAGGGCAAAGCGTTCCCGGAGGACGTGCTCCAGTGGATCGCGCTCAACTTCGTGCTCGCCGGGCGCGACACGTCGTCCGTCGCGCTCAGCTGGTTCTTCTGGACTCTCATGCAGAGGCGGGACGTGGAGCGCAAGGTGGTCCTCGAGATCGCCTCCGTTCTCAGGGAGACGCGCGGGGACGACACGGCGAGGTGGACGGAGGAGCCTCTAAACTTCGACGAGCTGGAGCGACTGGTGTACCTCAAGGCGGCATTGACGGAGACGCTGCGGCTGTACCCGTCTGTGCCGCAGGATTCCAAGTACGTCGTGGCGGACGACGTGCTGCCCGACGGCACAGTGGTGCCGGCCGGCTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAGAGCATATGGGGGAAGGACTGCGCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGCAGCCGCTTCGAGCCTGTCAAGGACGCGTACCGCTTCGTGGCGTTCAACGGCGGGCCGCGAACGTGCCTCGGCAAGGACCTGGCCTACCTGCAGATGAAATCCATCGCGTCCGCCGTGCTGCTGCGCAACTCGGTGGAGCTCGTGCCGGGGCACAAGGTGGAGCAGAAGATGTCGCTGACGCTTTTCATGAAGAATGGACTGCGAGTGCACGTCAAGCCGAGGGACATTGCCAGCTACGTCGAGCCGTCGGAGCCGGCGCCGCCGCAGGGCTCCCTCGTGATACCGACTACCACCGCAGCCGCTGCGTAGCCCAGCGTACGCGCCCACATGAATTGCGTCTGATTCCTGCTGCCTGGTGAGGTTGTCCTGCTTGTGCCAAAATGATTGTCTTTTTCCTTTTCACAATTCTCCTGCACTAGAGATCGAATTTCCTTGCGTACAATTAGGATTGTTCGTGCCTGGGGTCATATTGGTTGTATGGATACCGACGTGTGTGATAGTGTGATCAGGGTGAGGGTGGTGTACTTTTGTTGGGATCTATTATATTATTAAAACAACTTTGTGGGGACTAGAAATTCC]

[+] EMBL AK109676             [GGCGCACCGCACCATTTCTAAATCACATAGTGCTAAACCCGCCCCCTCTTAATTATATCTCCACTTAGCAAGGTGTGTGGTTGCGAGCTTAAAACGCACCCACGCAGGGCCATGGCGACCGATGGCGGCGTGTTGCAGCTGCACCCCTACGCCATGGCCGCGGCTGCCGTGGCATTGGCTTCGGCGTACATGGTGTGGTTCTGGGCGCTGTCGCGGCGGCTGTCCGGGCCACGGATGTGGCCGCTCGTCGGCAGCCTACCCAGCGTCGTGCTGAACCGGGCGCGGGTGCACGACTGGATCGCCGACAACCTGCGCGCCACGGGTGACGCCGCGACGTACCAGACGTGCATCCTGCCTCTGCCATTCCTGGCGCGGCGGCAGGGGCTGGTGACGGTGACGTGCAACCCGCGGAACCTTGAGCACATCCTGCGCGCGCGCTTCGACAACTACCCCAAGGGCCCCATGTGGCAGGCATCGTTCCACGACCTCCTCGGCCAGGGCATCTTCAACTCCGACGGCGAGACGTGGCTGATCCAGCGAAAGACGGCAGCCCTCGAGTTCACCACCCGGACGTTGCGCCAGGCCATGGCACGCTGGGCCAACCGCTCCATCAAGTACCGCCTGTGGCGTATCCTCGACGACCACTGCAACGCGGCCGCAAGCGTGGACCTCCAGGACCTCCTCCTGCGCCTCACCTTCGATAACATCTGCGGCCTCACCTTCGGCAAGGACCCAGAGACGCTGTCCCCCGGCTTGCCGGAGAACCCCTTCGCCAACGCTTTTGACGAGGCCACCGAGGCGACGATGCAGAGGTTCCTGTTCCCGAGCTTGTTGTGGCGCATCAAGAAGGCGTTCGGTGTCGGCAGCGAGCGGAGCCTCCGCGACAGCCTCGCCGTGGTGGACCGTCACATGACGGAGACCATCGCGGCACGCAAGGCGACGCCGTCGGACGACCTGCTGTCCCGGTTCATGAAGAAGCGCGACAGCAAGGGCAAAGCGTTCCCGGAGGACGTGCTCCAGTGGATCGCGCTCAACTTCGTGCTCGCCGGGCGCGACACGTCGTCCGTCGCGCTCAGCTGGTTCTTCTGGACTCTCATGCAGAGGCGGGACGTGGAGCGCAAGGTGGTCCTCGAGATCGCCTCCGTTCTCAGGGAGACGCGCGGGGACGACACGGCGAGGTGGACGGAGGAGCCTCTAAACTTCGACGAGCTGGAGCGACTGGTGTACCTCAAGGCGGCATTGACGGAGACGCTGCGGCTGTACCCGTCTGTGCCGCAGGATTCCAAGTACGTCGTGGCGGACGACGTGCTGCCCGACGGCACAGTGGTGCCGGCCGGCTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAGAGCATATGGGGGAAGGACTGCGCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGCAGCCGCTTCGAGCCTGTCAAGGACGCGTACCGCTTCGTGGCGTTCAACGGCGGGCCGCGAACGTGCCTCGGCAAGGACCTGGCCTACCTGCAGATGAAATCCATCGCGTCCGCCGTGCTGCTGCGCAACTCGGTGGAGCTCGTGCCGGGGCACAAGGTGGAGCAGAAGATGTCGCTGACGCTTTTCATGAAGAATGGACTGCGAGTGCACGTCAAGCCGAGGGACATTGCCAGCTACGTCGAGCCGTCGGAGCCGGCGCCGCCGCAGGGCTCCCTCGTGATACCGACTACCACCGCAGCCGCTGCGTAGCCCAGCGTACGCGCCCACATGAATTGCGTCTGATTCCTGCTGCCTGGTGAGGTTGTCCTGCTTGTGCCAAAATGATTGTCTTTTTCCTTTTCACAATTCTCCTGCACTAGAGATCGAATTTCCTTGCGTACAATTAGGATTGTTCGTGCCTGGGGTCATATTGGTTGTATGGATACCGACGTGTGTGATAGTGTGATCAGGGTGAGGGTGGTGTACTTTTGTTGGGATCTATTATATTATTAAAACAACTTTGTGGGGACTAGAAATTCC]




>consensus_208#0
GGCGCACCGCACCATTTCTAAATCACATAGTGCTAAACCCGCCCCCTCTTAATTATATCT
CCACTTAGCAAGGTGTGTGGTTGCGAGCTTAAAACGCACCCACGCAGGGCCATGGCGACC
GATGGCGGCGTGTTGCAGCTGCACCCCTACGCCATGGCCGCGGCTGCCGTGGCATTGGCT
TCGGCGTACATGGTGTGGTTCTGGGCGCTGTCGCGGCGGCTGTCCGGGCCACGGATGTGG
CCGCTCGTCGGCAGCCTACCCAGCGTCGTGCTGAACCGGGCGCGGGTGCACGACTGGATC
GCCGACAACCTGCGCGCCACGGGTGACGCCGCGACGTACCAGACGTGCATCCTGCCTCTG
CCATTCCTGGCGCGGCGGCAGGGGCTGGTGACGGTGACGTGCAACCCGCGGAACCTTGAG
CACATCCTGCGCGCGCGCTTCGACAACTACCCCAAGGGCCCCATGTGGCAGGCATCGTTC
CACGACCTCCTCGGCCAGGGCATCTTCAACTCCGACGGCGAGACGTGGCTGATCCAGCGA
AAGACGGCAGCCCTCGAGTTCACCACCCGGACGTTGCGCCAGGCCATGGCACGCTGGGCC
AACCGCTCCATCAAGTACCGCCTGTGGCGTATCCTCGACGACCACTGCAACGCGGCCGCA
AGCGTGGACCTCCAGGACCTCCTCCTGCGCCTCACCTTCGATAACATCTGCGGCCTCACC
TTCGGCAAGGACCCAGAGACGCTGTCCCCCGGCTTGCCGGAGAACCCCTTCGCCAACGCT
TTTGACGAGGCCACCGAGGCGACGATGCAGAGGTTCCTGTTCCCGAGCTTGTTGTGGCGC
ATCAAGAAGGCGTTCGGTGTCGGCAGCGAGCGGAGCCTCCGCGACAGCCTCGCCGTGGTG
GACCGTCACATGACGGAGACCATCGCGGCACGCAAGGCGACGCCGTCGGACGACCTGCTG
TCCCGGTTCATGAAGAAGCGCGACAGCAAGGGCAAAGCGTTCCCGGAGGACGTGCTCCAG
TGGATCGCGCTCAACTTCGTGCTCGCCGGGCGCGACACGTCGTCCGTCGCGCTCAGCTGG
TTCTTCTGGACTCTCATGCAGAGGCGGGACGTGGAGCGCAAGGTGGTCCTCGAGATCGCC
TCCGTTCTCAGGGAGACGCGCGGGGACGACACGGCGAGGTGGACGGAGGAGCCTCTAAAC
TTCGACGAGCTGGAGCGACTGGTGTACCTCAAGGCGGCATTGACGGAGACGCTGCGGCTG
TACCCGTCTGTGCCGCAGGATTCCAAGTACGTCGTGGCGGACGACGTGCTGCCCGACGGC
ACAGTGGTGCCGGCCGGCTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAG
AGCATATGGGGGAAGGACTGCGCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGC
AGCCGCTTCGAGCCTGTCAAGGACGCGTACCGCTTCGTGGCGTTCAACGGCGGGCCGCGA
ACGTGCCTCGGCAAGGACCTGGCCTACCTGCAGATGAAATCCATCGCGTCCGCCGTGCTG
CTGCGCAACTCGGTGGAGCTCGTGCCGGGGCACAAGGTGGAGCAGAAGATGTCGCTGACG
CTTTTCATGAAGAATGGACTGCGAGTGCACGTCAAGCCGAGGGACATTGCCAGCTACGTC
GAGCCGTCGGAGCCGGCGCCGCCGCAGGGCTCCCTCGTGATACCGACTACCACCGCAGCC
GCTGCGTAGCCCAGCGTACGCGCCCACATGAATTGCGTCTGATTCCTGCTGCCTGGTGAG
GTTGTCCTGCTTGTGCCAAAATGATTGTCTTTTTCCTTTTCACAATTCTCCTGCACTAGA
GATCGAATTTCCTTGCGTACAATTAGGATTGTTCGTGCCTGGGGTCATATTGGTTGTATG
GATACCGACGTGTGTGATAGTGTGATCAGGGTGAGGGTGGTGTACTTTTGTTGGGATCTA
TTATATTATTAAAACAACTTTGTGGGGACTAGAAATTCC

consensusID : consensus_208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [CGCCTTGNGCTACTGGTGTACCTCAATGCCGCCTTAAGATACACCAGTCGTCCGGCTGTACCCGTTTGTCTCGCAGNATTCCAAGTACGTNGTGGCGGACGACGTGCTGCCCGANGGCACAGTGGTGCGGCCGGNTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAGAGCATATGGGGGAAGGACTGCNCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGAGCCGNTTCGAGCCTGTNAAGGACGNGTACCGTTTCGTGG]

[+] EMBL OSS4296A             [CGCCTTGNGCTACTGGTGTACCTCAATGCCGCCTTAAGATACACCAGTCGTCCGGCTGTACCCGTTTGTCTCGCAGNATTCCAAGTACGTNGTGGCGGACGACGTGCTGCCCGANGGCACAGTGGTGCGGCCGGNTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAGAGCATATGGGGGAAGGACTGCNCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGAGCCGNTTCGAGCCTGTNAAGGACGNGTACCGTTTCGTGG]




>consensus_208#1
CGCCTTGNGCTACTGGTGTACCTCAATGCCGCCTTAAGATACACCAGTCGTCCGGCTGTA
CCCGTTTGTCTCGCAGNATTCCAAGTACGTNGTGGCGGACGACGTGCTGCCCGANGGCAC
AGTGGTGCGGCCGGNTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAATGGAGAGC
ATATGGGGGAAGGACTGCNCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGACGGAGCC
GNTTCGAGCCTGTNAAGGACGNGTACCGTTTCGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_208#0      GGCGCACCGCACCATTTCTAAATCACATAGTGCTAAACCCGCCCCCTCTTAATTATATCT 60
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CCACTTAGCAAGGTGTGTGGTTGCGAGCTTAAAACGCACCCACGCAGGGCCATGGCGACC 120
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      GATGGCGGCGTGTTGCAGCTGCACCCCTACGCCATGGCCGCGGCTGCCGTGGCATTGGCT 180
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TCGGCGTACATGGTGTGGTTCTGGGCGCTGTCGCGGCGGCTGTCCGGGCCACGGATGTGG 240
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CCGCTCGTCGGCAGCCTACCCAGCGTCGTGCTGAACCGGGCGCGGGTGCACGACTGGATC 300
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      GCCGACAACCTGCGCGCCACGGGTGACGCCGCGACGTACCAGACGTGCATCCTGCCTCTG 360
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CCATTCCTGGCGCGGCGGCAGGGGCTGGTGACGGTGACGTGCAACCCGCGGAACCTTGAG 420
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CACATCCTGCGCGCGCGCTTCGACAACTACCCCAAGGGCCCCATGTGGCAGGCATCGTTC 480
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CACGACCTCCTCGGCCAGGGCATCTTCAACTCCGACGGCGAGACGTGGCTGATCCAGCGA 540
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      AAGACGGCAGCCCTCGAGTTCACCACCCGGACGTTGCGCCAGGCCATGGCACGCTGGGCC 600
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      AACCGCTCCATCAAGTACCGCCTGTGGCGTATCCTCGACGACCACTGCAACGCGGCCGCA 660
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      AGCGTGGACCTCCAGGACCTCCTCCTGCGCCTCACCTTCGATAACATCTGCGGCCTCACC 720
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TTCGGCAAGGACCCAGAGACGCTGTCCCCCGGCTTGCCGGAGAACCCCTTCGCCAACGCT 780
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TTTGACGAGGCCACCGAGGCGACGATGCAGAGGTTCCTGTTCCCGAGCTTGTTGTGGCGC 840
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      ATCAAGAAGGCGTTCGGTGTCGGCAGCGAGCGGAGCCTCCGCGACAGCCTCGCCGTGGTG 900
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      GACCGTCACATGACGGAGACCATCGCGGCACGCAAGGCGACGCCGTCGGACGACCTGCTG 960
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TCCCGGTTCATGAAGAAGCGCGACAGCAAGGGCAAAGCGTTCCCGGAGGACGTGCTCCAG 1020
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TGGATCGCGCTCAACTTCGTGCTCGCCGGGCGCGACACGTCGTCCGTCGCGCTCAGCTGG 1080
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TTCTTCTGGACTCTCATGCAGAGGCGGGACGTGGAGCGCAAGGTGGTCCTCGAGATCGCC 1140
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TCCGTTCTCAGGGAGACGCGCGGGGACGACACGGCGAGGTGGACGGAGGAGCCTCTAAAC 1200
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TTCGACGAGCTGGAGCGACTGGTGTACCTCAAGGCGGCATTGACGGAGAC--GCTG--CG 1256
consensus_208#1      ------CGCCTTGNGCTACTGGTGTACCTCAATGCCGCCTTAAGATACACCAGTCGTCCG 54
                              ** * ** *************** ** ** ** *   * **  *  *  **

consensus_208#0      GCTGTACCCGTCTGTGCCGCAGGATTCCAAGTACGTCGTGGCGGACGACGTGCTGCCCGA 1316
consensus_208#1      GCTGTACCCGTTTGTCTCGCAGNATTCCAAGTACGTNGTGGCGGACGACGTGCTGCCCGA 114
                     *********** ***  ***** ************* ***********************

consensus_208#0      CGGCACAGTGGTGCCGGCCGGCTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAAT 1376
consensus_208#1      NGGCACAGTGGTGC-GGCCGGNTCGGCGATCACCTACTCCATCTACTCAGTGGGAAGAAT 173
                      ************* ****** **************************************

consensus_208#0      GGAGAGCATATGGGGGAAGGACTGCGCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGA 1436
consensus_208#1      GGAGAGCATATGGGGGAAGGACTGCNCAGAGTTCCGGCCGGAGCGGTGGCTATCGGCCGA 233
                     ************************* **********************************

consensus_208#0      CGGCAGCCGCTTCGAGCCTGTCAAGGACGCGTACCGCTTCGTGGCGTTCAACGGCGGGCC 1496
consensus_208#1      CGG-AGCCGNTTCGAGCCTGTNAAGGACGNGTACCGTTTCGTGG---------------- 276
                     *** ***** *********** ******* ****** *******                

consensus_208#0      GCGAACGTGCCTCGGCAAGGACCTGGCCTACCTGCAGATGAAATCCATCGCGTCCGCCGT 1556
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      GCTGCTGCGCAACTCGGTGGAGCTCGTGCCGGGGCACAAGGTGGAGCAGAAGATGTCGCT 1616
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      GACGCTTTTCATGAAGAATGGACTGCGAGTGCACGTCAAGCCGAGGGACATTGCCAGCTA 1676
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      CGTCGAGCCGTCGGAGCCGGCGCCGCCGCAGGGCTCCCTCGTGATACCGACTACCACCGC 1736
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      AGCCGCTGCGTAGCCCAGCGTACGCGCCCACATGAATTGCGTCTGATTCCTGCTGCCTGG 1796
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TGAGGTTGTCCTGCTTGTGCCAAAATGATTGTCTTTTTCCTTTTCACAATTCTCCTGCAC 1856
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TAGAGATCGAATTTCCTTGCGTACAATTAGGATTGTTCGTGCCTGGGGTCATATTGGTTG 1916
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TATGGATACCGACGTGTGTGATAGTGTGATCAGGGTGAGGGTGGTGTACTTTTGTTGGGA 1976
consensus_208#1      ------------------------------------------------------------
                                                                                 

consensus_208#0      TCTATTATATTATTAAAACAACTTTGTGGGGACTAGAAATTCC 2019
consensus_208#1      -------------------------------------------