cluster # 2081

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Oryza sativa
cluster # 2081 cluster # 2081 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2081#0 length = 434 sequences # 1

consensus_2081#1 length = 270 sequences # 1

consensusID : consensus_2081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CTTGCCCGAGATATGGGACGGTTGGTCTGAATCTGATGTTGTTCTGGCTTCCACTGCTTCTGAGACCACGGTTATTGCTTGATTGTGTCATACTTTGCCCCACTGGATATTATATTGTGCCAAAATGAATGTTTGATGAAAGTATATCCAAGATTGCTATTCATGGGTGCCAACAGAAGACACATGCTGACATGCATATAGTAGTAGGTAAGAGATTATGGATAAAAGAATTCCGTATTGATGGAATTGTATCCATTGTACTTGGATAGATTANTGAGAACTTTGAGAAGTAAATGTAGTGGATGGCTTGCACCAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAATATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACCTGACTAAAAAAAAAA]

[+] EMBL BM421478             [CTTGCCCGAGATATGGGACGGTTGGTCTGAATCTGATGTTGTTCTGGCTTCCACTGCTTCTGAGACCACGGTTATTGCTTGATTGTGTCATACTTTGCCCCACTGGATATTATATTGTGCCAAAATGAATGTTTGATGAAAGTATATCCAAGATTGCTATTCATGGGTGCCAACAGAAGACACATGCTGACATGCATATAGTAGTAGGTAAGAGATTATGGATAAAAGAATTCCGTATTGATGGAATTGTATCCATTGTACTTGGATAGATTANTGAGAACTTTGAGAAGTAAATGTAGTGGATGGCTTGCACCAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAATATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACCTGACTAAAAAAAAAA]




>consensus_2081#0
CTTGCCCGAGATATGGGACGGTTGGTCTGAATCTGATGTTGTTCTGGCTTCCACTGCTTC
TGAGACCACGGTTATTGCTTGATTGTGTCATACTTTGCCCCACTGGATATTATATTGTGC
CAAAATGAATGTTTGATGAAAGTATATCCAAGATTGCTATTCATGGGTGCCAACAGAAGA
CACATGCTGACATGCATATAGTAGTAGGTAAGAGATTATGGATAAAAGAATTCCGTATTG
ATGGAATTGTATCCATTGTACTTGGATAGATTANTGAGAACTTTGAGAAGTAAATGTAGT
GGATGGCTTGCACCAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAATA
TCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACCT
GACTAAAAAAAAAA

consensusID : consensus_2081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [ACATGCTGACATGCATATAGTAGTATGGTAAGAGATTATGGATAAAAGAATTCCGTATTGATGGAATTGTATCAATTGTACTTGGATAGATTAGTGAGAACCTTTGAGAAGTAAATGTAGTGGATGGCTTGCACAAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAATATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACATGATACATCGTGTTCCTGGAACTAAAAAAA]

[+] EMBL BI812217             [ACATGCTGACATGCATATAGTAGTATGGTAAGAGATTATGGATAAAAGAATTCCGTATTGATGGAATTGTATCAATTGTACTTGGATAGATTAGTGAGAACCTTTGAGAAGTAAATGTAGTGGATGGCTTGCACAAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAATATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACATGATACATCGTGTTCCTGGAACTAAAAAAA]




>consensus_2081#1
ACATGCTGACATGCATATAGTAGTATGGTAAGAGATTATGGATAAAAGAATTCCGTATTG
ATGGAATTGTATCAATTGTACTTGGATAGATTAGTGAGAACCTTTGAGAAGTAAATGTAG
TGGATGGCTTGCACAAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAAT
ATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATACA
TGATACATCGTGTTCCTGGAACTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2081#0      CTTGCCCGAGATATGGGACGGTTGGTCTGAATCTGATGTTGTTCTGGCTTCCACTGCTTC 60
consensus_2081#1      ------------------------------------------------------------
                                                                                  

consensus_2081#0      TGAGACCACGGTTATTGCTTGATTGTGTCATACTTTGCCCCACTGGATATTATATTGTGC 120
consensus_2081#1      ------------------------------------------------------------
                                                                                  

consensus_2081#0      CAAAATGAATGTTTGATGAAAGTATATCCAAGATTGCTATTCATGGGTGCCAACAGAAGA 180
consensus_2081#1      ------------------------------------------------------------
                                                                                  

consensus_2081#0      CACATGCTGACATGCATATAGTAGTA-GGTAAGAGATTATGGATAAAAGAATTCCGTATT 239
consensus_2081#1      -ACATGCTGACATGCATATAGTAGTATGGTAAGAGATTATGGATAAAAGAATTCCGTATT 59
                       ************************* *********************************

consensus_2081#0      GATGGAATTGTATCCATTGTACTTGGATAGATTANTGAGAAC-TTTGAGAAGTAAATGTA 298
consensus_2081#1      GATGGAATTGTATCAATTGTACTTGGATAGATTAGTGAGAACCTTTGAGAAGTAAATGTA 119
                      ************** ******************* ******* *****************

consensus_2081#0      GTGGATGGCTTGCACCAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAA 358
consensus_2081#1      GTGGATGGCTTGCACAAGAAAATGCTCTTGGGTTGCCATTTATAATGAGGAGCAACGGAA 179
                      *************** ********************************************

consensus_2081#0      TATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATAC 418
consensus_2081#1      TATCTTTCAAGAGGCTCTAATTATGCAACATCTTGTTTACAGGTGTTCCAAAATGCATAC 239
                      ************************************************************

consensus_2081#0      CTGA------------CTAAAAAAAAAA--- 434
consensus_2081#1      ATGATACATCGTGTTCCTGGAACTAAAAAAA 270
                       ***            **  **  ****