cluster # 2096

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Oryza sativa
cluster # 2096 cluster # 2096 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2096#0 length = 270 sequences # 1

consensus_2096#1 length = 204 sequences # 1

consensusID : consensus_2096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTCCAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTAANNNTACTGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGGCATTTCTGGAAATGNNNATTGNNNNACCNNNNNNTTTNNNNNAATCCAACANNNTCACNNCCTCCAAATATCTTCTTCAATTTCTNNNCACN]

[+] EMBL CF196059             [TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTCCAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTAANNNTACTGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGGCATTTCTGGAAATGNNNATTGNNNNACCNNNNNNTTTNNNNNAATCCAACANNNTCACNNCCTCCAAATATCTTCTTCAATTTCTNNNCACN]




>consensus_2096#0
TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTC
CAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTA
ANNNTACTGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGGCA
TTTCTGGAAATGNNNATTGNNNNACCNNNNNNTTTNNNNNAATCCAACANNNTCACNNCC
TCCAAATATCTTCTTCAATTTCTNNNCACN

consensusID : consensus_2096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [TTTTTTTTTTCCAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTAAAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGTCATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCACGCCCCGGACGCGT]

[-] EMBL BQ908272             [TTTTTTTTTTCCAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTAAAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGTCATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCACGCCCCGGACGCGT]




>consensus_2096#1
TTTTTTTTTTCCAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATC
AAGTTTAGCTAAAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTAC
ATAAAGGCTGTCATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCC
AACACGATCACGCCCCGGACGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2096#0      TTTGAAGAGCCAAAAGCCAGTAAACCATTTAATGACAATACTAAAGGAAGATGTGTGTTC 60
consensus_2096#1      -------------------------------------------------TTTTTTTTTTC 11
                                                                         * * * ***

consensus_2096#0      CAAGAACACGTTCACCATTCTTAAACCAACACAAGGCACCATTCATATCAAGTNTNNCTA 120
consensus_2096#1      CAAGAACANGTTCACCATTCTTAAACCAGCANAAGGGACCATTCATATCAAGTTTAGCTA 71
                      ******** ******************* ** **** **************** *  ***

consensus_2096#0      ANNNT-ACTG-ATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAATGCTGG 178
consensus_2096#1      AAGATCACTGGATAAAAGTCACAGCTAATACAAAAAGAGCAAGATTTACATAAAGGCTGT 131
                      *   * **** ******************************************* **** 

consensus_2096#0      CATTTCTGG-AAATGNNNATTGNNNNA-CCNNNNNNTTTNNNNNAATCCAACANNNTCAC 236
consensus_2096#1      CATTTCTGGGAAANGAGGATTGGAGTAACCCAGAGATTTCAAGAAATCCAACACGATCAC 191
                      ********* *** *   ****    * **      ***     *********   ****

consensus_2096#0      NNCCTCCAAATATCTTCTTCAATTTCTNNNCACN 270
consensus_2096#1      GCCCCGGACGCGT--------------------- 204
                        **   *    *