cluster # 2111

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Oryza sativa
cluster # 2111 cluster # 2111 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2111#0 length = 590 sequences # 1

consensus_2111#1 length = 496 sequences # 1

consensusID : consensus_2111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATCTTTTTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTTTTCGGCCATTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATTTTCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCACCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGTCATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTGCTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGTGTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACAC]

[+] EMBL CF337784             [GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATCTTTTTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTTTTCGGCCATTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATTTTCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCACCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGTCATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTGCTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGTGTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACAC]




>consensus_2111#0
GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATCTTTT
TTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTTTTCGGC
CATTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATTTTCCAGTGCTAGCTCCA
ACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGTTTGTTGAAACGA
TAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTG
CAGTCACCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTG
ATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGTCATGGTGGAAT
GCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTGCTGCTGCAAGG
GCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGTGTAATGAGAAG
GGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACAC

consensusID : consensus_2111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTTTCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCTTCGTCCGTGGAGAAAAGCCCGGATCTTTTCAGTACACGCGTGCGTGCAAACTAGTACTCCGTATATCTCGATCGCAACCTCATGGCGTGAGAAAAAGCTCGCGGCTTTTCCTTGCATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGT]

[+] EMBL CF310666             [CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTTTCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCTTCGTCCGTGGAGAAAAGCCCGGATCTTTTCAGTACACGCGTGCGTGCAAACTAGTACTCCGTATATCTCGATCGCAACCTCATGGCGTGAGAAAAAGCTCGCGGCTTTTCCTTGCATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTGCTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTTGTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATCAGCCTGATCTTCCCGT]




>consensus_2111#1
CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTT
TCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCT
TCGTCCGTGGAGAAAAGCCCGGATCTTTTCAGTACACGCGTGCGTGCAAACTAGTACTCC
GTATATCTCGATCGCAACCTCATGGCGTGAGAAAAAGCTCGCGGCTTTTCCTTGCATCGG
CTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTGCTAGC
TCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTTGTTGA
AACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGAGTCGA
CGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCATGATC
AGCCTGATCTTCCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2111#0      ------------------------------------------------------------
consensus_2111#1      CCCGCCTTGCAAGCCTCCTTGGCTTGTCGCTGCTGCTGCGGCTGCTTCTCTGCTCTCTTT 60
                                                                                  

consensus_2111#0      ------------------------------------------------------------
consensus_2111#1      TCTTTGCCCCTGCTCCCTTGCCCACGCCGTCGCCTTTGCATCGCATCCTTGCTTCTTTCT 120
                                                                                  

consensus_2111#0      ----GAGTAGAAAAGAACTTTCTTCTGTCTCAACGTGTGATTTGCTCGTTCGTGTTGATC 56
consensus_2111#1      TCGTCCGTGGAGAAAAGCCCGGATCT-TTTCAGTACACG---CGTGCGTGCAAACTAGTA 176
                            ** ** ** * *     *** * ***      *    *  *** *    *  * 

consensus_2111#0      TTT--TTTATCCTGAATCTTGTCAGAGATTGTAAACAAACAACTCAATCTCAGGCGACTT 114
consensus_2111#1      CTCCGTATATCTCGATCGCAACCTCATGGCGTGAG-AAAAAGCTCGCGGCTTTTCCTTGC 235
                       *   * ****  **       *  *    ** *  *** * ***         *     

consensus_2111#0      TTCGGCCA-TTGTTCTGAATTCTGAAGAATATCTCTTCTTGGCTTATATT--TTCCAGTG 171
consensus_2111#1      ATCGGCTAGCTAATTTGCAGGCCGCACGGCGTTCTCCTCCTCCTCATCCTCCTCCCAGTG 295
                       ***** *  *  * ** *  * * *     *          ** **  *  * ******

consensus_2111#0      CTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGG-TTT 230
consensus_2111#1      CTAGCTCCAACGATCTGGAGGCTGCATGTTACGCAAAGCTTTGTTTCGATATAGGGGTTT 355
                      ******************************************************** ***

consensus_2111#0      GTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGA 290
consensus_2111#1      GTTGAAACGATAGAGGATGGCGGATCACTTCGCGCTGATGGCTGGTCGGCTGCTCACGGA 415
                      ************************************************************

consensus_2111#0      GTCGACGCTGCAGTCA-CCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCA 349
consensus_2111#1      GTCGACGCTGCAGTCAGCCGTGCAGGAGGCTCTCGCTGTCGCCTCCGTGAAGATAGTTCA 475
                      **************** *******************************************

consensus_2111#0      TGATCAGCCTGATCTTCCCGTTCATGAAGATGTTCAGGATGGAAAGGCGAAGAGCGGTGT 409
consensus_2111#1      TGATCAGCCTGATCTTCCCGT--------------------------------------- 496
                      *********************                                       

consensus_2111#0      CATGGTGGAATGCAGAATCTGCCAGGAGGAAGGTGACGAGTCCTACATGGAGACCCCTTG 469
consensus_2111#1      ------------------------------------------------------------
                                                                                  

consensus_2111#0      CTGCTGCAAGGGCAGCCTCAAGGCAAGTACGCACACCACGCATGCATCCAAAGGGTGGGT 529
consensus_2111#1      ------------------------------------------------------------
                                                                                  

consensus_2111#0      GTAATGAGAAGGGAGACACAGTATGCGAGATATGCTTACAGCAATTCACGCCAAACTACA 589
consensus_2111#1      ------------------------------------------------------------
                                                                                  

consensus_2111#0      C 590
consensus_2111#1      -