These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTTCGATTGATCTTGCAGATAAGTTTGGC] [+] EMBL AK109217 [ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTTCGATTGATCTTGCAGATAAGTTTGGC] consensusID : consensus_212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [AGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTTCCNNNNCNAGNNAAGCGCGG] [+] EMBL CA755731 [AGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTTCCNNNNCNAGNNAAGCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_212#0 ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGC 60 consensus_212#1 -------------------------------------------------AGCTAGCTCGC 11 *********** consensus_212#0 AATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGG 120 consensus_212#1 AATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGG 71 ************************************************************ consensus_212#0 AGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTG 180 consensus_212#1 AGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTG 131 ************************************************************ consensus_212#0 CCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTG 240 consensus_212#1 CCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTG 191 ************************************************************ consensus_212#0 GTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGT 300 consensus_212#1 GTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGT 251 ************************************************************ consensus_212#0 CCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCG 360 consensus_212#1 CCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCG 311 ************************************************************ consensus_212#0 CCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATG 420 consensus_212#1 CCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATG 371 ************************************************************ consensus_212#0 ACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTAT 480 consensus_212#1 ACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTAT 431 ************************************************************ consensus_212#0 TCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAA 540 consensus_212#1 TCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAA 491 ********** * *********************************************** consensus_212#0 TGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTT 600 consensus_212#1 TGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTT 551 ************************************* ********************** consensus_212#0 CGATTGATCTTGCAGATAAGTTTGGC 626 consensus_212#1 CCNNNN-----CNAGNNAAGCGCGG- 571 * ** *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||