cluster # 212

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 212 cluster # 212 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_212#0 length = 626 sequences # 1

consensus_212#1 length = 571 sequences # 1

consensusID : consensus_212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTTCGATTGATCTTGCAGATAAGTTTGGC]

[+] EMBL AK109217             [ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTTCGATTGATCTTGCAGATAAGTTTGGC]




>consensus_212#0
ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGC
AATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGG
AGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTG
CCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTG
GTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGT
CCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCG
CCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATG
ACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTAT
TCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAA
TGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTT
CGATTGATCTTGCAGATAAGTTTGGC

consensusID : consensus_212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [AGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTTCCNNNNCNAGNNAAGCGCGG]

[+] EMBL CA755731             [AGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTATTCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTTCCNNNNCNAGNNAAGCGCGG]




>consensus_212#1
AGCTAGCTCGCAATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAG
GCGGGAGGAGGAGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTG
ACGTGGTCGTGCCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCC
GTGCTGGTGTGGTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCC
GTCGGCCTCGTCCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGT
GCGTGCCGCCGCCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCT
GCCGAGAGATGACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTT
AGTCTTATTATTCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAA
TGTGATCAGAATGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGAT
TTCAGATGCTTCCNNNNCNAGNNAAGCGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_212#0      ACCTCGCCGCACGGCAGCGGCAGCAGCAGCGTGCCACGAGACGACCACCAGCTAGCTCGC 60
consensus_212#1      -------------------------------------------------AGCTAGCTCGC 11
                                                                      ***********

consensus_212#0      AATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGG 120
consensus_212#1      AATGGCGCAGCACGAGAGGAAGCCAGTCGGCGAGGCGGTGGACGTGGAGGCGGGAGGAGG 71
                     ************************************************************

consensus_212#0      AGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTG 180
consensus_212#1      AGGAGGACGGCAGCGAGCTGCGGCGGCGGCGGGGGAGAGAATGAGGTTGACGTGGTCGTG 131
                     ************************************************************

consensus_212#0      CCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTG 240
consensus_212#1      CCTCGCCGTGGCGGCGGGCGTGGCGGCGACGGGGGTGGCGGGCGCGGCCGTGCTGGTGTG 191
                     ************************************************************

consensus_212#0      GTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGT 300
consensus_212#1      GTGGGCGGTGGCGTTCCACCCGGCGCATGAGCAGCTGTGGATGGTGCCCGTCGGCCTCGT 251
                     ************************************************************

consensus_212#0      CCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCG 360
consensus_212#1      CCTCCTCGGCACCCCGCTCGTCGCCTGGCTCTCCCTCTTCGCCTCCGGTGCGTGCCGCCG 311
                     ************************************************************

consensus_212#0      CCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATG 420
consensus_212#1      CCTCGGCAGCCTCCGCGCCGTCCAGGACCAGGTCCCGCCGCCCTTCGCTGCCGAGAGATG 371
                     ************************************************************

consensus_212#0      ACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTAT 480
consensus_212#1      ACTGGGTTGTCTTCGATCTGTCGTCCGTCCGTCGAGTGTACATTTTCTTAGTCTTATTAT 431
                     ************************************************************

consensus_212#0      TCTTCTTCGGTGTTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAA 540
consensus_212#1      TCTTCTTCGGGGNTCTTTCTTATCGTCGTTTTTCCTAAGATGATCGGAATGTGATCAGAA 491
                     ********** * ***********************************************

consensus_212#0      TGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACAAACCTGCAGATTTCAGATGCTT 600
consensus_212#1      TGGGATCCAAATTCTAAAGAAAAGTTCTTGCTAGTACCAACCTGCAGATTTCAGATGCTT 551
                     ************************************* **********************

consensus_212#0      CGATTGATCTTGCAGATAAGTTTGGC 626
consensus_212#1      CCNNNN-----CNAGNNAAGCGCGG- 571
                     *            **  ***   **