These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAAGTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGCCCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACTACCTCTGTGCCTAAAAAAA] [+] EMBL BM422048 [TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAAGTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGCCCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACTACCTCTGTGCCTAAAAAAA] consensusID : consensus_213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GCCACCTNCCAAGAGGACTGCGCCCAGATCGGGGTCGGGCACCCTGCACTGCCCCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCACTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCCAAAAAAAAAA] [+] EMBL BQ907840 [GCCACCTNCCAAGAGGACTGCGCCCAGATCGGGGTCGGGCACCCTGCACTGCCCCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCACTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_213#0 TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAA 60 consensus_213#1 ------------------------------------------------------------ consensus_213#0 GTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGC 120 consensus_213#1 ------------------------------------------------------------ consensus_213#0 GCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGT 180 consensus_213#1 ------------------------------------------------------------ consensus_213#0 GCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGC 240 consensus_213#1 ------------------------------------------------------------ consensus_213#0 TGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAA 300 consensus_213#1 ----------------------------------------------------GCCACCTN 8 * * * consensus_213#0 ACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGC 360 consensus_213#1 CCAAGAGGA---CTGCGCCCAGATCGGGGTCGGGCACCCTGC---ACTGC---------C 53 ****** * *** * * * * ** ** ** **** * consensus_213#0 CCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAA 420 consensus_213#1 CCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCA 113 ** ****************************************************** * consensus_213#0 CTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGAT 480 consensus_213#1 CTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGAT 173 ************** ********************************************* consensus_213#0 GAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACT 540 consensus_213#1 GAATCCAAAAAAAAAA-------------------------------------------- 189 ***** * * * consensus_213#0 ACCTCTGTGCCTAAAAAAA 559 consensus_213#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||