cluster # 213

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Oryza sativa
cluster # 213 cluster # 213 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_213#0 length = 559 sequences # 1

consensus_213#1 length = 189 sequences # 1

consensusID : consensus_213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAAGTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGCCCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACTACCTCTGTGCCTAAAAAAA]

[+] EMBL BM422048             [TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAAGTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGCCCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACTACCTCTGTGCCTAAAAAAA]




>consensus_213#0
TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAA
GTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGC
GCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGT
GCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGC
TGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAA
ACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGC
CCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAA
CTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGAT
GAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACT
ACCTCTGTGCCTAAAAAAA

consensusID : consensus_213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GCCACCTNCCAAGAGGACTGCGCCCAGATCGGGGTCGGGCACCCTGCACTGCCCCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCACTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCCAAAAAAAAAA]

[+] EMBL BQ907840             [GCCACCTNCCAAGAGGACTGCGCCCAGATCGGGGTCGGGCACCCTGCACTGCCCCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCACTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCCAAAAAAAAAA]




>consensus_213#1
GCCACCTNCCAAGAGGACTGCGCCCAGATCGGGGTCGGGCACCCTGCACTGCCCCTCGGT
GTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCACTAGTGA
TTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCCA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_213#0      TGTTGCTGGGTATTATATTGAATGAAATTAATTTGTCATTCAATTAATTAATGTGCCCAA 60
consensus_213#1      ------------------------------------------------------------
                                                                                 

consensus_213#0      GTGTACATGTTTCCTTGATCAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGC 120
consensus_213#1      ------------------------------------------------------------
                                                                                 

consensus_213#0      GCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGT 180
consensus_213#1      ------------------------------------------------------------
                                                                                 

consensus_213#0      GCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGC 240
consensus_213#1      ------------------------------------------------------------
                                                                                 

consensus_213#0      TGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAA 300
consensus_213#1      ----------------------------------------------------GCCACCTN 8
                                                                         *  * *  

consensus_213#0      ACAAGAGTAATACTGTTCTTACTATGCTCCCAAGCGTCCAGCTGGGCTGCACCTGCATGC 360
consensus_213#1      CCAAGAGGA---CTGCGCCCAGATCGGGGTCGGGCACCCTGC---ACTGC---------C 53
                      ****** *   ***  *  *    *    *  **  ** **    ****         *

consensus_213#0      CCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAA 420
consensus_213#1      CCTCGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCCA 113
                     **  ****************************************************** *

consensus_213#0      CTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGAT 480
consensus_213#1      CTAGTGATTTGATCCCTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGAT 173
                     ************** *********************************************

consensus_213#0      GAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACT 540
consensus_213#1      GAATCCAAAAAAAAAA-------------------------------------------- 189
                     *****   * *  *                                              

consensus_213#0      ACCTCTGTGCCTAAAAAAA 559
consensus_213#1      -------------------