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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1551 fasta sequence
[CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT]
[+] EMBL AK072296 [CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTCTTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAATCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGGGTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCGAAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTTTAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCGCCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGTCCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGACCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCGTCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGGCCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGGGCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGATCCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCCTCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCCCGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCTACGTGTCCACGGGCGGCGGCGACGGCCTGGACTGCGCGCTCGCCGCCGCGGTGTACGGAGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT]
consensusID : consensus_2131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA]
[+] EMBL BQ907118 [TCCACGGCCGCGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGGAGGGGAGGCGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTATTGTTCTTTTTGTTTTGTTAGATTTGGATGACAATGTTAGACATTGAGTCAGTAAACAAAGGAGGATGTAAAGCAAACGGCAAATCTCTTGTGTCTTGGATTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2131#0 CGAGCTCCCGTCCATTCCCTCGTCTCTCTGGATAGGGGATCTGGAAAATTTGCTGCTCTC 60
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 TTGATCGAGCGGTGAAACTTTCTCACCATTCATCCATCCGGCGAAACTTCCACTGATGAA 120
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 TCGGACTTCCCAAACCTTTCCACGCTCTCGCTCCAAATGACCAAAAGCCAGAGGAGGAGG 180
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 GTTTCGCAGCAACAACGTGGGCGCCCACGGCCCGCGCCCGGTCAGCGAGGAAACAGATCG 240
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 AAAAAAAACAAAAGCCGCTGACGTCACGATCTCGAGGCTCGCGATTCCCAACAATCTCTT 300
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 TAAAAAGCTTCCTCTCGCCGAATCCCCCTCCACCTCCACCACCCGCCGCCGCCGCCGCCG 360
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CCGCCGCCATGGCCTCCGACCTGCGCCCGCCGGAGCACCAGGTGGCGGGGCACCGCGCGT 420
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CCGCCGACAAGCTGGGCCCGCTCGTCGACGGCGAGGGGCTCTTCTACAAGCCCCTCCAGA 480
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CCGGGGAGCGCGGGGAGCACGAGGCCGCCTTCTACGCCGCGTTCACCGCGCACCCGGCCG 540
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 TCCCGCCCCGGGTCCGGGGCGCCTTCTTCCCGCGCTTCCACGGCACCCGCTTCCTCCCGG 600
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CCCCAGCCAGCCCCGGCGGCGCGCCCTACCCGCACATCGTCCTCGACGACCTCCTCGCGG 660
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 GCCTCCCGTCCCCCTGCGTCGCCGACGTCAAGATCGGCGCCTGCACGTGGCCGCCGCGAT 720
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CCCCGGACCCCTACGTCGCCAAGTGCCTCGCCAAGGACCGCGAGACCACCAGCGCGCTCC 780
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 TCGGCTTCCGCGTCTCCGGCGTCCGGGTGGTCGATGCCCGGGGCGGCGCCGTGTGGCGCC 840
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 CGGACCGGTCGGAGCTGAAGGGGATCGACGCCGCCGGGGTCCGCCGCGTGCTCCGCCGCT 900
consensus_2131#1 ------------------------------------------------------------
consensus_2131#0 ACGTGTCCACGGGCGGCGGCGACGGCCTGGA-CTGCGCGCT-CGCCGCCGCGGTGTACGG 958
consensus_2131#1 -----TCCACGGCCG--CGCGACGGCNTGGATCTGCGCGTTTCGCCGCCGCGGTGTACGG 53
******* ** ******** **** ******* * ******************
consensus_2131#0 AGGGGAGGGCGGCGTCCTGGCTCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 1018
consensus_2131#1 AGGGGAGG-CGGCNTCCTGGCGCAGCTGCGGGAGCTCAAGGCGTGGTTCGAGGAGCAAAC 112
******** **** ******* **************************************
consensus_2131#0 CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 1078
consensus_2131#1 CCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGC 172
************************************************************
consensus_2131#0 GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 1138
consensus_2131#1 GGCTGCTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGT 232
************************************************************
consensus_2131#0 CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 1198
consensus_2131#1 CGACGATGGGGACGGGGTGATTGACCACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAA 292
************************************************************
consensus_2131#0 GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 1258
consensus_2131#1 GTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTCAGATCATTCTTGAAA 352
************************************************************
consensus_2131#0 ATTTTGTCAGCTTGGAGATCAGATGATTAA-ACGGTCCAACATTGTGTTCTTGCAAATGT 1317
consensus_2131#1 ATTTTGTCAGCTTGGAGATCAGATGATTAACACGGTAAAGCAATGCCCCTCTATGTTTAT 412
****************************** ***** * ** ** * * *
consensus_2131#0 CACACATAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTC 1377
consensus_2131#1 TGTTCTTTTT---GTTTTGTTAGATTTGGATGA---CAAT-GTTAGACATTGAG----TC 461
* * * ** * * ** ** **** *** ** * * **
consensus_2131#0 ACCGAGCTGCCGGTAACGTAAATGCGAAGCGACTCACCGGCAGCTCTCCCGGCAAACTTA 1437
consensus_2131#1 AGTAAACAAAGGAGGATGTAAA-GCAAA---------CGGCAAATCTCTTGTGTCTTGGA 511
* * * * * ***** ** ** ***** **** * *
consensus_2131#0 CGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGGATTCGGGGTGCATT 1497
consensus_2131#1 TTATGTTCTATACTGNTGGAAGAAGATTAAAGTATAAACAGAAAAAA------------- 558
**** * * * * * **** * *
consensus_2131#0 GGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGT 1551
consensus_2131#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||