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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[TCCTTTTTTGTTTTTGAAAAAACGGTGCATACAGCATTTCAGGCTTTTCAACAGTGTCATATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGACAGCGTACCTATAATTATTTCTGAGGCCGAGAACGAAAACACCGCACATCCCTATACTGAACAAGCAAAACAAAAGGGAAAGAAACAATGGAGAATTAATTGGGTAGCGACCAACAGAAACTGCTACGCTTTGTGCCTCCCTCAGATTCAGAGGGAAAGATGCACCTCTCGAGCTCAACTGCCTCCTCACCTTTACAAATGACTAGTCACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGTCAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGAATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACGTATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGACAGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATAGCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTCCTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTCAACCAAAGGCATTTCCCTTAAAGCTTC]
[+] EMBL CB671992 [TCCTTTTTTGTTTTTGAAAAAACGGTGCATACAGCATTTCAGGCTTTTCAACAGTGTCATATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGACAGCGTACCTATAATTATTTCTGAGGCCGAGAACGAAAACACCGCACATCCCTATACTGAACAAGCAAAACAAAAGGGAAAGAAACAATGGAGAATTAATTGGGTAGCGACCAACAGAAACTGCTACGCTTTGTGCCTCCCTCAGATTCAGAGGGAAAGATGCACCTCTCGAGCTCAACTGCCTCCTCACCTTTACAAATGACTAGTCACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGTCAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGAATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACGTATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGACAGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATAGCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTCCTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTCAACCAAAGGCATTTCCCTTAAAGCTTC]
consensusID : consensus_2135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence
[TTTTTTTTTTAGAAAAAACGGGTGCATACGCATTTCAGGCTTTCAACAGTGTCATATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCATAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCACACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGTCAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGCCACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA]
[-] EMBL BI806985 [TTTTTTTTTTAGAAAAAACGGGTGCATACGCATTTCAGGCTTTCAACAGTGTCATATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCATAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCACACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGTCAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGCCACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2135#0 TCCTTTTTTGTTTTTGAAAAAACGG-TGCATACAGCATTTCAGGCTTTTCAACAGTGTCA 59
consensus_2135#1 ----TTTTTTTTTTAGAAAAAACGGGTGCATAC-GCATTTCAGGCTTT-CAACAGTGTCA 54
***** **** ********** ******* ************** ***********
consensus_2135#0 TATTTACCCTAACATCCAGAAACGAATCTCACTATACACGATAGAC-AGCGTACCTATAA 118
consensus_2135#1 TATTTACCCTAANATCCAGAAACGAATCTCACTATACACGATAGACCAGCGTCACCCTCA 114
************ ********************************* ***** * * *
consensus_2135#0 TTAT------TTCTGAGGCCGAG--AACGAAAA--CACC-GCACATC-CCTATACTGAAC 166
consensus_2135#1 TAATATCATATTCTGAGGCCGCAGCAACGAACAACCACCCGCACATCGCCTATACTGCAC 174
* ** *********** ****** * **** ******* ********* **
consensus_2135#0 A---AGCAAAA---CAAAAGGGAAAGAAACA-------ATGGAG--AATTAA--TTGGGT 209
consensus_2135#1 ACCAAGCGAACAACCAACAAGGTCAACAGCACAACCACATGGCAGCAATTCACATTGGGT 234
* *** ** *** * ** * * ** **** **** * ******
consensus_2135#0 -AGCGACCAACAG---AAACTGCT-ACGCTTTGTGCCTCCCTCAGA--TTCAGAGGGA-- 260
consensus_2135#1 CAGCGACCAACCAGCAACACTGCTCACGCTTTGAGCCTCCCTCAGCATTCCAGCAGGGGC 294
********** * ****** ******** *********** * *** **
consensus_2135#0 ---AAGATGC--ACCTCTC-GAGCTCAAC-TGCCTCC-TCACC-TTTACAAATGACTAGT 311
consensus_2135#1 CACAGATTGCCAACCTCTCTGAGCTCAACGTGNCTCCCTCACNCTTTACAA--------- 345
* *** ******* ********* ** **** **** *******
consensus_2135#0 CACCAGCAAAAAAGATTAAAAAAAAAAAAAGAATGGGCAATGAATTAACTTGTCTCAAGT 371
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 CAGTCAATCGTCAATATCCTGCACCCATTGCAGACCTTCTAATACTGATTCCACAGCTGA 431
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 ATTTGGAATCATAAGTCCAACAATCCGCTCATTATCATTTGTCTCCAAGCGAGCGACACG 491
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 TATCCTCTTGTGAATTTGTCGAACCTGCTTAGCTAGGGCCTTTTCTACTATGCCCCAGAC 551
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 AGGAAGTATTAGACCACCCAAAATATTGATTTCCTGTAACCTTCTGCCTACTGTACAATA 611
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 GCTTCCAAGTTTGCATTTGGGTCCATGCATACACTGCTTGGATGATGCATCATACTCTTC 671
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 CTGCCAACCATTGCCAATTTTGTCAATTGATGAAACCTTCCTGTACTTGCTTTTAAGTTC 731
consensus_2135#1 ------------------------------------------------------------
consensus_2135#0 AACCAAAGGCATTTCCCTTAAAGCTTC 758
consensus_2135#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||