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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2116 fasta sequence
[GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGCCGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCTGCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGATCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGAGATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATCCGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGCCGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGGAGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCAAGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACAACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATGTATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCACACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAATGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAAGCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGAACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATCTACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCACTCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACCATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGATCAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGTTATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATATTGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTAAAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAGCATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAATGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTTAGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGTGGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTCAAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCTTGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCATTTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCCTATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAAATGTTGTGATGTTTTT]
[+] EMBL AK100507 [GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGCCGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCTGCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGATCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGAGATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATCCGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGCCGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGGAGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCAAGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACAACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATGTATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCACACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAATGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAAGCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGAACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATCTACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCACTCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACCATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGATCAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGTTATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATATTGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTAAAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAGCATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAATGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTTAGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGTGGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTCAAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCTTGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCATTTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCCTATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAAATGTTGTGATGTTTTT]
consensusID : consensus_214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[CCTCCTTCCCCCGCCGCCGCCGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACCCACGACGGCGGCGCGCCCCCTCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG]
[+] EMBL CB640772 [CCTCCTTCCCCCGCCGCCGCCGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCTCGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCTCCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCTCCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCTCGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCTCCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACCCACGACGGCGGCGCGCCCCCTCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_214#0 GTTTCAAAACCCCCCAAAACCCAAGGGCTAATCGGGCAACCTCCTTCCCCACGCCGCCGC 60
consensus_214#1 ---------------------------------------CCTCCTTCCCC-CGCCGCCGC 20
*********** *********
consensus_214#0 CGCCGCGATGCCCCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCT 120
consensus_214#1 CGCCGCGATGCCTCCTCCCTTCCCGACGGCGACCGCCGCCGCCTCCACCACCTCCCACCT 80
************ ***********************************************
consensus_214#0 CGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCT 180
consensus_214#1 CGCCCTCCTCCTCCTCCTCTCATCCTCCTCCGTCTTCTTCCTCTACAAGTCCCTCCGCCT 140
************************************************************
consensus_214#0 CCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCT 240
consensus_214#1 CCGCCGCAACAACCCACCATCCCCTCCTCCGGGCCAGGGCCCCGCCCCAACCCCGACCCT 200
************************************************************
consensus_214#0 CCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCT 300
consensus_214#1 CCTCTACGCCTCCGCCACCGGCACCTCCAAGGCCCTCGCCGCCGGCCTCTCCCGCCGCCT 260
************************************************************
consensus_214#0 CGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCT 360
consensus_214#1 CGCGGAGGCCGGCGTCACCGCCCACCCCGCCGACGCCGCGGCCTTCGACCCGGACGACCT 320
************************************************************
consensus_214#0 CCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCGCCGCGAGGAGCTTCTCGCGGTGGCT 420
consensus_214#1 CCCCTCCCTCCCGCTGCTGCTGCTCGTGCTCCCCACC-------------CACGACGGCG 367
********************************** ** * ** ***
consensus_214#0 GCGCGCGCTCGGCGCCGCCGAGGTGGTCGCCGTCGGGGAGGGTGACGTGGATGGTGGGGA 480
consensus_214#1 GCGCGCCCCC--TCCCGCCGCGGCCTTCCTCGCCCGCTGGCTCGAGG------------- 412
****** * * ****** ** ** ** * * * ** *
consensus_214#0 TCTCGAGGTCGTGTTCGAGGAGTGGTGTGGGAGGGTGGTGAGGGTGGTGAAAGGGGAGGA 540
consensus_214#1 ------------------------------------------------------------
consensus_214#0 GATCGGAGAGGGGCACAACGGAGAGAGCGATGGCTTTGATGAGTTGGAAGAGGAGGAATC 600
consensus_214#1 ------------------------------------------------------------
consensus_214#0 CGATGATGACGACGACGAAGAGGAGGTCGATGGCGGGGAGGTCGACATGGAGGACATTGC 660
consensus_214#1 ------------------------------------------------------------
consensus_214#0 CGGGAAGGCACCGGCGGCAAGGAGGCGGAATGGGAAGGTGGAGGGGGCTTTGTCCAACGG 720
consensus_214#1 ------------------------------------------------------------
consensus_214#0 AGGGGAGAATGGTGTGAGGGACATGGTCACTCCAATCATCAGGACGAGTTTAGAGAAGCA 780
consensus_214#1 ------------------------------------------------------------
consensus_214#0 AGGTTACAAAATTATCGGTTCTCATAGTGGGGTGAAGATTTGTAGATGGACAAAGTCACA 840
consensus_214#1 ------------------------------------------------------------
consensus_214#0 ACTCCGAGGCCGCGGAGGGTGTTACAAGCACTCATTTTATGGCATAGAAAGTCACAGATG 900
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TATGGAGGCAACTCCAAGTCTGGCCTGTGCAAATAAGTGTGTGTTTTGTTGGAGGCATCA 960
consensus_214#1 ------------------------------------------------------------
consensus_214#0 CACAAATCCTGTTGGGAAGAGTTGGAAATGGAAGATGGATGATCCTCTCGACATTGTTAA 1020
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TGCTGCAATTGATCAACACACAAAGATGGTTAAGCAGATGAAAGGGGTACCAGGAGTAAA 1080
consensus_214#1 ------------------------------------------------------------
consensus_214#0 GCCAGAGAGGCTGGCAGAGGGTCTATCTCCTAGACATTGTGCATTATCTCTGGTCGGGGA 1140
consensus_214#1 ------------------------------------------------------------
consensus_214#0 ACCGATTATGTATCCAGAGATAAATGTTCTGATCGATGAGCTACACCGCAGACACATATC 1200
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TACATTTCTTGTCACTAATGCACAGTTTCCTGATAAGATTAAGACACTGAAACCAATCAC 1260
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TCAGCTGTATGTCAGTGTGGATGCAGCTACAAAGGAAAGCTTGAAAGCTGTCGACAGACC 1320
consensus_214#1 ------------------------------------------------------------
consensus_214#0 ATTATTTCAGACTTCTGGGAGCGTTTTCTGGATTCACTGAAGTCACTGCATGACAAAGAT 1380
consensus_214#1 ------------------------------------------------------------
consensus_214#0 CAACGAACTGTCTACCGGCTGACATTGGTTAAAGGCTGGAATGCAGAAGAGATAGATGGT 1440
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TATGCAAAGTTACTAAGCCTTGGCCAACCCGATTTCATTGAAATCAAGGGTGTGACATAT 1500
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TGTGGCTCGTCAGCAACTTCCAAGTTAACGATGGAAAATGTCCCCTGGCACTCTGATGTA 1560
consensus_214#1 ------------------------------------------------------------
consensus_214#0 AAAGATTTCTCAGAGGCTTTGGCATTAAAAAGCGGTGGCGTGTATGAAGTAGCTTGTGAG 1620
consensus_214#1 ------------------------------------------------------------
consensus_214#0 CATGCTCATTCATGCTGTGTTCTACTTGCAAAGGTGGATAAGTTCAAGATCAACGGCAAA 1680
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TGGCATACCTGGATAGATTATGATCGATTCCATGAACTGGTGACATCCGGAAAGCCTTTT 1740
consensus_214#1 ------------------------------------------------------------
consensus_214#0 AGGAGCCAAGATTACATGGCTCTCACACCTTCCTGGGCTGTCTATGGTGCAGAGGAAGGT 1800
consensus_214#1 ------------------------------------------------------------
consensus_214#0 GGCTTTGATCCAGATCAATCTCGTTACAAGAAAGAAAGACGTCATGGTGCAGCAGCGCTC 1860
consensus_214#1 ------------------------------------------------------------
consensus_214#0 AAAGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCT 1920
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TGAAGGACTAACCTATTTTCTAGATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCAT 1980
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAATTGTGTACGCCATAGGCC 2040
consensus_214#1 ------------------------------------------------------------
consensus_214#0 TATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAA 2100
consensus_214#1 ------------------------------------------------------------
consensus_214#0 ATGTTGTGATGTTTTT 2116
consensus_214#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||