cluster # 2152

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2152 cluster # 2152 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2152#0 length = 606 sequences # 1

consensus_2152#1 length = 591 sequences # 1

consensusID : consensus_2152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAAAAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCATAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCGCCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTTAATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACTCTGCCCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGTCATAAGCCTCATGGTTCGGACACCAAGATCTCGTAGTATCTGGGCACCAATACCGTCCCCTTGTCTC]

[+] EMBL CA763687             [TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAAAAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCATAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCGCCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTTAATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACTCTGCCCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGTCATAAGCCTCATGGTTCGGACACCAAGATCTCGTAGTATCTGGGCACCAATACCGTCCCCTTGTCTC]




>consensus_2152#0
TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAA
AAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCA
TAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAG
GATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGC
TTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCT
CCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCG
CCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTT
AATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACT
CTGCCCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGTC
ATAAGCCTCATGGTTCGGACACCAAGATCTCGTAGTATCTGGGCACCAATACCGTCCCCT
TGTCTC

consensusID : consensus_2152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [TTTTTGCATAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCGCCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTTAATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACTCTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGNCANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTANTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGGGNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA]

[-] EMBL AU032663             [TTTTTGCATAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGCTTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCGCCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTTAATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACTCTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGNCANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTANTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGGGNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA]




>consensus_2152#1
TTTTTGCATAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACT
TTTGGCAGGATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGAC
GAGTGCGCTTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATA
GTTAATCTCCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTT
TTNTGCCGCCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCC
CCATCTTTAATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACA
GTGGNACTCTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGA
TTGTNAGNCANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAA
TACCGGTANTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGT
TATCCNGGGNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2152#0      TTTTTTTTTTTTTTAAATACACACACATACATATAAAACAAAATATATGCATCCCTCAAA 60
consensus_2152#1      ------------------------------------------------------------
                                                                                  

consensus_2152#0      AAACATTACAAACATCAAACATATTACATACTTTAGGCGTAAATGCTTGGGAGAGGTGCA 120
consensus_2152#1      ----------------------------------------------------TTTTTGCA 8
                                                                              ****

consensus_2152#0      TAAACATGCATCATATATTTTGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAG 180
consensus_2152#1      TAAACATGCATCATATATTTNGGATAACGGAAGATCAAGGAGCGTAAAAACTTTTGGCAG 68
                      ******************** ***************************************

consensus_2152#0      GATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGC 240
consensus_2152#1      GATGACAAGTGCAAAAAACTGGAGATACATAAAACCAAAACTGGAGCACGACGAGTGCGC 128
                      ************************************************************

consensus_2152#0      TTAAAATCAAATTCGTGGATTATATTCCACCGCCTTAAGAAAAATGAATATAGTTAATCT 300
consensus_2152#1      TTAAAATCAAATTCGNGGATTATATTCCACCGCCTTAAGNAAAATGAATATAGTTAATCT 188
                      *************** *********************** ********************

consensus_2152#0      CCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCTCCTTTTTTATGCCG 360
consensus_2152#1      CCTGGAGTTTACTCTTGCTCGCTAGCACTGTCAATCTGATCTTGCNCCTTTTTTNTGCCG 248
                      ********************************************* ******** *****

consensus_2152#0      CCATCAGCCAAGGTGCTTGTATTACCACTAGGCCGGGTTCCATAAACATGCCCCATCTTT 420
consensus_2152#1      CCATCAGCCAAGGNGCTTGTNTNACCACTAGGCCGGGNTCCATANACATGCCCCATCTTT 308
                      ************* ****** * ************** ****** ***************

consensus_2152#0      AATCTCTTTGTTTCCATGTAACGCCGATTCTCATTGGTTATTGGTGTCAACAGTGGCACT 480
consensus_2152#1      AATCTCTTNGTTTCCATGTAACGCCGATTCNCATTGGNTATTGGNGTCAACAGTGGNACT 368
                      ******** ********************* ****** ****** *********** ***

consensus_2152#0      CTGC-CCAAGACACTCAAACCATAGCCCTTCAGTCCAGTATATTTCGCAGGATTGTTAGT 539
consensus_2152#1      CTGCGCCAAGACACTCAAACCATAGNCCTTCAGTCCAGTATATTNCGNAGGATTGTNAGN 428
                      **** ******************** ****************** ** ******** ** 

consensus_2152#0      CATAAGCCTCATGGTTCGGACACCAAG-ATCTCGTAGTA-TCTGGGCACCAATACCG-TC 596
consensus_2152#1      CANAAGCCTCATGGTTCGGACANCAAGGATCTCGTAGTAATCTGNGCACCAATACCGGTA 488
                      ** ******************* **** *********** **** ************ * 

consensus_2152#0      CCCTTGTCTC-------------------------------------------------- 606
consensus_2152#1      NTCTCGTGAAATCAAACCGGGNAGANCGAGATNCTCATTAGCCTCCAACAGTTATCCNGG 548
                        ** **                                                     

consensus_2152#0      -------------------------------------------
consensus_2152#1      GNCATCGGGCCTGCAAAATNNGNATGCACGGAANCTTGGTGAA 591