cluster # 2159

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Oryza sativa
cluster # 2159 cluster # 2159 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2159#0 length = 337 sequences # 1

consensus_2159#1 length = 269 sequences # 1

consensusID : consensus_2159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAAGGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCAGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCATTTCTGGAAATTTATCTATTGTCTTGTCAGTTTAGCGCCGTGGAGCCTATCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCTTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA766301             [GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAAGGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCAGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCATTTCTGGAAATTTATCTATTGTCTTGTCAGTTTAGCGCCGTGGAGCCTATCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCTTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_2159#0
GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAA
GGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCAG
AATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCATTTCTGGAAATTTA
TCTATTGTCTTGTCAGTTTAGCGCCGTGGAGCCTATCCGTGGACATCTCTGCAGTTAAGA
AACATCATATTGACCTTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAAAAAAAA
AAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_2159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [AACCCACTGCCACTATTACACCTAAACTCGTTGCCACGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATTTATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTACGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA]

[+] EMBL BQ906717             [AACCCACTGCCACTATTACACCTAAACTCGTTGCCACGAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATTTATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTACGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA]




>consensus_2159#1
AACCCACTGCCACTATTACACCTAAACTCGTTGCCACGAATAGCCTAATTATCCTGGATA
TGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATTTATCTATTGTCTTGTCACGTTTA
GCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGTTAAGAAACATCATATTGACCCTT
GTTATATGAGAAATCCTGCACTTTTATCTCCATGGTACGCCTCCGAATAAAAAATATCCA
GTCCATGCCCTCTGGTTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2159#0      GAGGACGAGACAAGGAGACGAGTGACTCTGCAAACTGAACAGAAAGAAGCAATGCAGAAA 60
consensus_2159#1      ------------------------------------------------------------
                                                                                  

consensus_2159#0      GGACCTTCAAATCTGCAGCAGTAGCATGAAACCATGCCATATACACTAAACTGTTGCCA- 119
consensus_2159#1      ----------------------AACCCACTGCCAC-TATTACACCTAAACTCGTTGCCAC 37
                                            * *      ***     ** **   **   ******* 

consensus_2159#0      GAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCA-TTTCTGGAAATT 178
consensus_2159#1      GAATAGCCTAATTATCCTGGATATGTTTAAGTTCTGGAGTGTGTCCACTTTCTGGAAATT 97
                      *********************************************** ************

consensus_2159#0      TATCTATTGTCTTGTCA-GTTTAGCGCCGTGGAG-CCTAT-CCGTGGACATCTCTGCAGT 235
consensus_2159#1      TATCTATTGTCTTGTCACGTTTAGCGCCGTGGAGGCCTATTCCGTGGACATCTCTGCAGT 157
                      ***************** **************** ***** *******************

consensus_2159#0      TAAGAAACATCATATTGACC-TTGTTATATGAGAAATCCTGCACTTTTATCTCAAAAAAA 294
consensus_2159#1      TAAGAAACATCATATTGACCCTTGTTATATGAGAAATCCTGCACTTTTATCTCCATGGTA 217
                      ******************** ******************************** *    *

consensus_2159#0      -------AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA-- 337
consensus_2159#1      CGCCTCCGAATAAAAAATATCCAGTCCATGCCCTCTGGTTTTAAAAAAAAAA 269
                              ** ****** *   **   *              ********