cluster # 2161

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2161 cluster # 2161 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2161#0 length = 1116 sequences # 1

consensus_2161#1 length = 287 sequences # 1

consensusID : consensus_2161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1116
fasta sequence

                              [ACTCCATAGATTTTTTTTTTTTGTTTCTCTTTGCTTCGATCGCTTCGTTCTCCATGGCGAGCGGCGGCGGCGGCGGCGGCGAGGCGGTGGAGGAGGGTACGACGACGCGGGTGGGCGACCTGCCGGAGGCGTGCCTGGCGGACGTGATCGCGCTCACCTCGCCGCGGGACGCCTGCAGGCTGGCCGCCGTGTCGCCGTCGTTCCGCGCCGCGGCGGAGTCGGACGCCGTCTGGGACCGCTTCCTCCCGCCGGACTACCGCGCCATCGCGCCCCTGCCGCCGCCGCCGGCTACGGCGGCGGCGAGCGGCGGCAAGAGGATGAAGAAGGGCGTCTACCTCGGGCTCTGCGACAAGCCCGTCCCCGTCGACGACGGCAGCATGATGGTGTGGCTGGAGAAGGAGAGCGGGGCCAAGTGCTTCGCGCTGCCGGCGAGGAAGCTGAGCTTGCCATGGGAGGACGGCGAGTTCAGCTGGAGATGGACACCTCACCCTCTCTCCAGGTTTGAGGAGGTGGCGCAGCTGGTGGACTGCACGTGCCTGGACATCTACGGGCGGCTGCCGGCGGCGGCGCTGACACCGGCGACGCCGTACGCGGCGTACCTGGTGTTCGGCACCGCGGCGGCGGCGGAGGGGCACCGCGGGCTGAGCTTCCCGGACCAGGAGACGACGGTGTCCGCGGCGGGGCGCGTCGTGGCGCGCCACGCCGTGTGCCTCCGCCCCGACGACGCCGAGGCGCGCAAGTTCAGGGGCGTCGGCCTCGCCGACGCCGGCGTCCCGGTCAGGCGCCCCGCGCGGCGCGGCGACGGGTGGTCGGAGATGGAGCTCGGCCGGGTGGCCGCCGACGAGGTCGCCGGCGCCGGCGGCGAGGACGTGGTGGCGAGCTTCGAGGTGCTCGGGTGGTATCCCAAGCGCGGCCTCGTCGTCGAGTGCATGGAGTTTAGGCCCGTAGTCTGAAGTTGGTAAAATGAACGGTCGTGATCGCGCGGATTCGCGGGTTGTATGACGTATCGGACGGTCCAGATGTTGGGCACGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACAACCATTA]

[+] EMBL AK109659             [ACTCCATAGATTTTTTTTTTTTGTTTCTCTTTGCTTCGATCGCTTCGTTCTCCATGGCGAGCGGCGGCGGCGGCGGCGGCGAGGCGGTGGAGGAGGGTACGACGACGCGGGTGGGCGACCTGCCGGAGGCGTGCCTGGCGGACGTGATCGCGCTCACCTCGCCGCGGGACGCCTGCAGGCTGGCCGCCGTGTCGCCGTCGTTCCGCGCCGCGGCGGAGTCGGACGCCGTCTGGGACCGCTTCCTCCCGCCGGACTACCGCGCCATCGCGCCCCTGCCGCCGCCGCCGGCTACGGCGGCGGCGAGCGGCGGCAAGAGGATGAAGAAGGGCGTCTACCTCGGGCTCTGCGACAAGCCCGTCCCCGTCGACGACGGCAGCATGATGGTGTGGCTGGAGAAGGAGAGCGGGGCCAAGTGCTTCGCGCTGCCGGCGAGGAAGCTGAGCTTGCCATGGGAGGACGGCGAGTTCAGCTGGAGATGGACACCTCACCCTCTCTCCAGGTTTGAGGAGGTGGCGCAGCTGGTGGACTGCACGTGCCTGGACATCTACGGGCGGCTGCCGGCGGCGGCGCTGACACCGGCGACGCCGTACGCGGCGTACCTGGTGTTCGGCACCGCGGCGGCGGCGGAGGGGCACCGCGGGCTGAGCTTCCCGGACCAGGAGACGACGGTGTCCGCGGCGGGGCGCGTCGTGGCGCGCCACGCCGTGTGCCTCCGCCCCGACGACGCCGAGGCGCGCAAGTTCAGGGGCGTCGGCCTCGCCGACGCCGGCGTCCCGGTCAGGCGCCCCGCGCGGCGCGGCGACGGGTGGTCGGAGATGGAGCTCGGCCGGGTGGCCGCCGACGAGGTCGCCGGCGCCGGCGGCGAGGACGTGGTGGCGAGCTTCGAGGTGCTCGGGTGGTATCCCAAGCGCGGCCTCGTCGTCGAGTGCATGGAGTTTAGGCCCGTAGTCTGAAGTTGGTAAAATGAACGGTCGTGATCGCGCGGATTCGCGGGTTGTATGACGTATCGGACGGTCCAGATGTTGGGCACGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACAACCATTA]




>consensus_2161#0
ACTCCATAGATTTTTTTTTTTTGTTTCTCTTTGCTTCGATCGCTTCGTTCTCCATGGCGA
GCGGCGGCGGCGGCGGCGGCGAGGCGGTGGAGGAGGGTACGACGACGCGGGTGGGCGACC
TGCCGGAGGCGTGCCTGGCGGACGTGATCGCGCTCACCTCGCCGCGGGACGCCTGCAGGC
TGGCCGCCGTGTCGCCGTCGTTCCGCGCCGCGGCGGAGTCGGACGCCGTCTGGGACCGCT
TCCTCCCGCCGGACTACCGCGCCATCGCGCCCCTGCCGCCGCCGCCGGCTACGGCGGCGG
CGAGCGGCGGCAAGAGGATGAAGAAGGGCGTCTACCTCGGGCTCTGCGACAAGCCCGTCC
CCGTCGACGACGGCAGCATGATGGTGTGGCTGGAGAAGGAGAGCGGGGCCAAGTGCTTCG
CGCTGCCGGCGAGGAAGCTGAGCTTGCCATGGGAGGACGGCGAGTTCAGCTGGAGATGGA
CACCTCACCCTCTCTCCAGGTTTGAGGAGGTGGCGCAGCTGGTGGACTGCACGTGCCTGG
ACATCTACGGGCGGCTGCCGGCGGCGGCGCTGACACCGGCGACGCCGTACGCGGCGTACC
TGGTGTTCGGCACCGCGGCGGCGGCGGAGGGGCACCGCGGGCTGAGCTTCCCGGACCAGG
AGACGACGGTGTCCGCGGCGGGGCGCGTCGTGGCGCGCCACGCCGTGTGCCTCCGCCCCG
ACGACGCCGAGGCGCGCAAGTTCAGGGGCGTCGGCCTCGCCGACGCCGGCGTCCCGGTCA
GGCGCCCCGCGCGGCGCGGCGACGGGTGGTCGGAGATGGAGCTCGGCCGGGTGGCCGCCG
ACGAGGTCGCCGGCGCCGGCGGCGAGGACGTGGTGGCGAGCTTCGAGGTGCTCGGGTGGT
ATCCCAAGCGCGGCCTCGTCGTCGAGTGCATGGAGTTTAGGCCCGTAGTCTGAAGTTGGT
AAAATGAACGGTCGTGATCGCGCGGATTCGCGGGTTGTATGACGTATCGGACGGTCCAGA
TGTTGGGCACGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCA
CTTGTTCTGATATATATAAACGAAATACAACCATTA

consensusID : consensus_2161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [CGTGGGTGGCGAGCTTCCGAGGTGCCTCGCGGTTGGTATTCCCACAGCGCCGGTTCTCGTCGTTCGAGTGCCACTGGAGTTTAGGCCCGTAGTTCTGAAGTTGGTACAAATGAACGCGTCGTGATTCGCCGCGGATTTCGCCGGGTTGTATGACCGTATCGGACCGGTCCAGATGTTGGGCACCGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACCACCATTATTAGTTTAAAAAAAAAA]

[+] EMBL BQ906704             [CGTGGGTGGCGAGCTTCCGAGGTGCCTCGCGGTTGGTATTCCCACAGCGCCGGTTCTCGTCGTTCGAGTGCCACTGGAGTTTAGGCCCGTAGTTCTGAAGTTGGTACAAATGAACGCGTCGTGATTCGCCGCGGATTTCGCCGGGTTGTATGACCGTATCGGACCGGTCCAGATGTTGGGCACCGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACCACCATTATTAGTTTAAAAAAAAAA]




>consensus_2161#1
CGTGGGTGGCGAGCTTCCGAGGTGCCTCGCGGTTGGTATTCCCACAGCGCCGGTTCTCGT
CGTTCGAGTGCCACTGGAGTTTAGGCCCGTAGTTCTGAAGTTGGTACAAATGAACGCGTC
GTGATTCGCCGCGGATTTCGCCGGGTTGTATGACCGTATCGGACCGGTCCAGATGTTGGG
CACCGTGGAGCCATCAGTTCATCTCGTTGATGAGCTGCTAAAGTATGGATTGCACTTGTT
CTGATATATATAAACGAAATACCACCATTATTAGTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2161#0      ACTCCATAGATTTTTTTTTTTTGTTTCTCTTTGCTTCGATCGCTTCGTTCTCCATGGCGA 60
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      GCGGCGGCGGCGGCGGCGGCGAGGCGGTGGAGGAGGGTACGACGACGCGGGTGGGCGACC 120
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      TGCCGGAGGCGTGCCTGGCGGACGTGATCGCGCTCACCTCGCCGCGGGACGCCTGCAGGC 180
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      TGGCCGCCGTGTCGCCGTCGTTCCGCGCCGCGGCGGAGTCGGACGCCGTCTGGGACCGCT 240
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      TCCTCCCGCCGGACTACCGCGCCATCGCGCCCCTGCCGCCGCCGCCGGCTACGGCGGCGG 300
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      CGAGCGGCGGCAAGAGGATGAAGAAGGGCGTCTACCTCGGGCTCTGCGACAAGCCCGTCC 360
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      CCGTCGACGACGGCAGCATGATGGTGTGGCTGGAGAAGGAGAGCGGGGCCAAGTGCTTCG 420
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      CGCTGCCGGCGAGGAAGCTGAGCTTGCCATGGGAGGACGGCGAGTTCAGCTGGAGATGGA 480
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      CACCTCACCCTCTCTCCAGGTTTGAGGAGGTGGCGCAGCTGGTGGACTGCACGTGCCTGG 540
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      ACATCTACGGGCGGCTGCCGGCGGCGGCGCTGACACCGGCGACGCCGTACGCGGCGTACC 600
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      TGGTGTTCGGCACCGCGGCGGCGGCGGAGGGGCACCGCGGGCTGAGCTTCCCGGACCAGG 660
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      AGACGACGGTGTCCGCGGCGGGGCGCGTCGTGGCGCGCCACGCCGTGTGCCTCCGCCCCG 720
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      ACGACGCCGAGGCGCGCAAGTTCAGGGGCGTCGGCCTCGCCGACGCCGGCGTCCCGGTCA 780
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      GGCGCCCCGCGCGGCGCGGCGACGGGTGGTCGGAGATGGAGCTCGGCCGGGTGGCCGCCG 840
consensus_2161#1      ------------------------------------------------------------
                                                                                  

consensus_2161#0      ACGAGGTCGCCGGCGCCGGCGGCGAGGACGTGG-TGGCGAGCTTC-GAGGTGCT---CGG 895
consensus_2161#1      ----------------------------CGTGGGTGGCGAGCTTCCGAGGTGCCTCGCGG 32
                                                  ***** *********** *******    ***

consensus_2161#0      GTGGTATCCCAAGCGCGGC----CTCGTCGT-CGAGTGCA--TGGAGTTTAGGCCCGTAG 948
consensus_2161#1      TTGGTATTCCCACAGCGCCGGTTCTCGTCGTTCGAGTGCCACTGGAGTTTAGGCCCGTAG 92
                       ****** ** *  *** *    ******** *******   ******************

consensus_2161#0      T-CTGAAGTTGGTA-AAATGAACG-GTCGTGATCG--CGCGGATTCG--CGGGTTGTATG 1001
consensus_2161#1      TTCTGAAGTTGGTACAAATGAACGCGTCGTGATTCGCCGCGGATTTCGCCGGGTTGTATG 152
                      * ************ ********* ********    ********    ***********

consensus_2161#0      AC-GTATCGGAC-GGTCCAGATGTTGGGCAC-GTGGAGCCATCAGTTCATCTCGTTGATG 1058
consensus_2161#1      ACCGTATCGGACCGGTCCAGATGTTGGGCACCGTGGAGCCATCAGTTCATCTCGTTGATG 212
                      ** ********* ****************** ****************************

consensus_2161#0      AGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACAACCATTA-- 1116
consensus_2161#1      AGCTGCTAAAGTATGGATTGCACTTGTTCTGATATATATAAACGAAATACCACCATTATT 272
                      ************************************************** *******  

consensus_2161#0      ---------------
consensus_2161#1      AGTTTAAAAAAAAAA 287