These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACGTCAGACCTCCATGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTTGTATACATTCTATTAGGGCCTACATTCTATGCCATTTTTTGAAGAACTGCTGTACATTCTGCATCTTCATTCTGTACTCCTTTACTAACGTTCTATTAGGATCTTTGAATCTTTGGATTCATGTCACTAAATGCCGTCATCATCGTCGAGGTAATCCACACTTGCATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACGATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGTTCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTTCTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATTGGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAGAATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATGGAAGTGTTGTTGCTTTCATCCCTGC] [+] EMBL CB677653 [GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACGTCAGACCTCCATGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTTGTATACATTCTATTAGGGCCTACATTCTATGCCATTTTTTGAAGAACTGCTGTACATTCTGCATCTTCATTCTGTACTCCTTTACTAACGTTCTATTAGGATCTTTGAATCTTTGGATTCATGTCACTAAATGCCGTCATCATCGTCGAGGTAATCCACACTTGCATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACGATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGTTCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTTCTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATTGGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAGAATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATGGAAGTGTTGTTGCTTTCATCCCTGC] consensusID : consensus_2170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGTCAGCGCTCATCACGTCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTCACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGAATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGGGTACATCCCACGGCTTGGAATTCGGCTTGGCAC] [-] EMBL BI808903 [CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTTTATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGTCAGCGCTCATCACGTCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGTACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAATTTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTCACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGAATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGGGTACATCCCACGGCTTGGAATTCGGCTTGGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2170#0 ----------------GGAGTAGCCCCAGTATCTATTTCTCGAATCTGGTAGCTCTTTTT 44 consensus_2170#1 CGTACAGAATATGAACGGAGTAGCCCCCGTTTCTATTTCTCGAATCTGGTAGCTCTTTTT 60 *********** ** ***************************** consensus_2170#0 TATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCGCTCAGCGCTCATCACG 104 consensus_2170#1 TATACTTCGCGGCGAGAACCTATGACCTTGCACGCACAGGACCG-TCAGCGCTCATCACG 119 ******************************************** *************** consensus_2170#0 TCAGACCTCCA-TGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGT 163 consensus_2170#1 TCAGACCTCCAGTGATTACAGCTTCCCAAAATCACCTACAGCGCTTAAGCCTATAGGAGT 179 *********** ************************************************ consensus_2170#0 ACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAAT 223 consensus_2170#1 ACTTTGTATGCTATACTATATCCTCCTCTCTTTTCTTAGAAAGGGAGGACGCCTGCTAAT 239 ************************************************************ consensus_2170#0 TTTGTATA--CATTCTATTAGGGCCTACATTCTATGCCATTTTTTG-AAGA-ACTGCTGT 279 consensus_2170#1 TTGGTATCACCATTCTATTAGGGCCTACATTCTATGCCATTTTTTGCAAGACACTGTGTC 299 ** **** ************************************ **** **** consensus_2170#0 AC-ATTCTGC-ATCTTCATTCT-GTACTCCTTTACTAACGTTCT-ATTAGG-ATCTTTGA 334 consensus_2170#1 ACCATTCTGCGATCTTCATTCTTGTACTCCTTTACTAACGTTCTCATTAGGCATCTTTGA 359 ** ******* *********** ********************* ****** ******** consensus_2170#0 ATCTTTGGATTCATGTC-ACTAA-ATGCCGTCA--TCATCGTCGAGGTAATCCACACTTG 390 consensus_2170#1 ATCTTGGGATTCATGTCCACTAACACGCTGTCCATCCATCGTCGAGG--GTACATCC--- 414 ***** *********** ***** * ** *** *********** * ** * consensus_2170#0 CATTGCTTGAATGCCGTTTAAGTCCCTCGAAGATCTCATCAAGCGACCCTGAACTAGACG 450 consensus_2170#1 CACGGCTTGGAATTCGGCTTGGCAC----------------------------------- 439 ** ***** * ** * * * consensus_2170#0 ATTGTGTTGATGACAGGCTCAAAGGAAGAAACTTCTTGGAACTCATGTTTGCTTTGAAGT 510 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 TCTGAAATCCCGTCTTCATTAAGGTCCATCTCGATGCGATTCCAGCTGATGAATCTGGTT 570 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 CTTTACTGACAGAAGAGGGTGTCTCTGAGTTTCCAGTTTCAGGCACAACAGAGGTCGATT 630 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 GGGTTTCTGTCTGGGCTTGCTTAACTGCTTGATGGCTGCTGTTTTGTTCTCTTATAGAAG 690 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 AATATTTAAGAGCAACGTTACTAGCATATTTCGACTGGAGTCTTCCTTCCTTTTTGGATG 750 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 GAAGTGTTGTTGCTTTCATCCCTGC 775 consensus_2170#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||