These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTATCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGAGCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCANAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTTCCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGTTTAATTTGGCCAGCCAACTAATTCATTTTGATCTGAACCAAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATATTTTAAAAAAAAAA] [+] EMBL BQ906486 [CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTATCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGAGCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCANAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTTCCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGTTTAATTTGGCCAGCCAACTAATTCATTTTGATCTGAACCAAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATATTTTAAAAAAAAAA] consensusID : consensus_2181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence [ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGTTAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA] [+] EMBL BQ906469 [ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGTTAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2181#0 CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTA 60 consensus_2181#1 ------------------------------------------------------------ consensus_2181#0 TCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGA 120 consensus_2181#1 ------------------------------------------------------------ consensus_2181#0 GCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCA 180 consensus_2181#1 ------------------------------------------------------------ consensus_2181#0 NAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTT 240 consensus_2181#1 ------------------------------------------------------------ consensus_2181#0 CCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGT 300 consensus_2181#1 ------------------ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGT 42 ** ** **** * ** ** ** ** *** consensus_2181#0 TTAATT-TGGCCAGCCA---ACTAA-TTCA-TTTTGATCTGAACCAAATTTAGCGATGAA 354 consensus_2181#1 TAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAA-TTTAGCGATGAA 101 * **** ****** ** ***** **** ************* ** ************ consensus_2181#0 TTTGAATTCGGTTATTATTGGAGAGTACAGGTATA-TTTTAAAAAAAAAA 403 consensus_2181#1 TTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA 151 *********************************** ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||