cluster # 2181

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2181 cluster # 2181 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2181#0 length = 403 sequences # 1

consensus_2181#1 length = 151 sequences # 1

consensusID : consensus_2181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTATCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGAGCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCANAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTTCCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGTTTAATTTGGCCAGCCAACTAATTCATTTTGATCTGAACCAAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATATTTTAAAAAAAAAA]

[+] EMBL BQ906486             [CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTATCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGAGCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCANAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTTCCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGTTTAATTTGGCCAGCCAACTAATTCATTTTGATCTGAACCAAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATATTTTAAAAAAAAAA]




>consensus_2181#0
CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTA
TCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGA
GCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCA
NAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTT
CCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGT
TTAATTTGGCCAGCCAACTAATTCATTTTGATCTGAACCAAATTTAGCGATGAATTTGAA
TTCGGTTATTATTGGAGAGTACAGGTATATTTTAAAAAAAAAA

consensusID : consensus_2181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 151
fasta sequence

                              [ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGTTAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA]

[+] EMBL BQ906469             [ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGTTAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAATTTAGCGATGAATTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA]




>consensus_2181#1
ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGTTAAATTGTGGCCACGCAC
ACACTAAGTTCACTTTTGATCTGAACNAATTTAGCGATGAATTTGAATTCGGTTATTATT
GGAGAGTACAGGTATAGTTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2181#0      CGCGCCGCGCGCGAGGTGTCCCGCCGCGCGCTGGTTCGCCCGAGGCCTCGGAGTACCGTA 60
consensus_2181#1      ------------------------------------------------------------
                                                                                  

consensus_2181#0      TCCACACGGAGCGCCACAGGGCGCCCACGGAGGTATTCGCTTCNTGGGCCGCGCCGGTGA 120
consensus_2181#1      ------------------------------------------------------------
                                                                                  

consensus_2181#0      GCCCCCGGGCGGCTGTCGCCCGGTGGCGGCGAGGCTGCTCGGCCTGGACCCGAGGAGCCA 180
consensus_2181#1      ------------------------------------------------------------
                                                                                  

consensus_2181#0      NAGCTAGCTAAGCTGATCGATCGATCAGAAAGCCCTTGTAATTAATTAAGCTCNAATTTT 240
consensus_2181#1      ------------------------------------------------------------
                                                                                  

consensus_2181#0      CCGTTCTTGATTGCCGCTTGATTTGTTCATTTGATCCAGATTGCTAGCTGCTCCTCTTGT 300
consensus_2181#1      ------------------ATATGTGAGTCCACGATCTGCCTAGCCGCCTCCTTCTTGTGT 42
                                          ** **       ****    * **   ** ** **  ***

consensus_2181#0      TTAATT-TGGCCAGCCA---ACTAA-TTCA-TTTTGATCTGAACCAAATTTAGCGATGAA 354
consensus_2181#1      TAAATTGTGGCCACGCACACACTAAGTTCACTTTTGATCTGAACNAA-TTTAGCGATGAA 101
                      * **** ******  **   ***** **** ************* ** ************

consensus_2181#0      TTTGAATTCGGTTATTATTGGAGAGTACAGGTATA-TTTTAAAAAAAAAA 403
consensus_2181#1      TTTGAATTCGGTTATTATTGGAGAGTACAGGTATAGTTTTAAAAAAAAAA 151
                      *********************************** **************