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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1461 fasta sequence
[AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAATAATACGTTTTACAAGATATACCTTTGACTTTAAAAA]
[+] EMBL AB003496 [AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAATAATACGTTTTACAAGATATACCTTTGACTTTAAAAA]
consensusID : consensus_2187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1419 fasta sequence
[TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA]
[+] EMBL OSDIHYFLA [TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGTTAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAGGCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTCATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTTGGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAGGCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTCCACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCCACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGCATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTACGACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATGTACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGGCTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATGCCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATCCTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTCGAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGGATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGGTTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAGAAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGCTCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTTGGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTATTGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGAGATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGATTTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2187#0 ----------------AACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGT 44
consensus_2187#1 TATATTCTGCGAATCCAACACAAGCACCGCGGCGTAGTACTACTACTTGCGCGCGCGTGT 60
********************************************
consensus_2187#0 TAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAG 104
consensus_2187#1 TAGATTCGCGTGCGAATCCAACACAAGCAGATCGATCACGCACGGTACGCCATGGGCGAG 120
************************************************************
consensus_2187#0 GCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTC 164
consensus_2187#1 GCGGTGAAGGGGCCAGTGGTGGTGACGGGCGCGTCGGGCTTCGTCGGCTCATGGCTCGTC 180
************************************************************
consensus_2187#0 ATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTT 224
consensus_2187#1 ATGAAGCTCCTCCAGGCCGGCTACACCGTCCGCGCCACAGTGCGCGACCCCTCTAACGTT 240
************************************************************
consensus_2187#0 GGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAG 284
consensus_2187#1 GGGAAGACGAAGCCGTTGCTGGAGCTGGCGGGGTCGAAGGAGAGGCTGACGCTGTGGAAG 300
************************************************************
consensus_2187#0 GCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTC 344
consensus_2187#1 GCCGACCTGGGCGAGGAAGGCAGCTTCGACGCGGCGATCAGGGGTTGCACGGGCGTGTTC 360
************************************************************
consensus_2187#0 CACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGGTCAAGCCC 404
consensus_2187#1 CACGTCGCGACGCCCATGGACTTCGAGTCCGAGGACCCGGAGAACGAGGTGATCAAGCCC 420
*************************************************** ********
consensus_2187#0 ACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGC 464
consensus_2187#1 ACCGTGGAAGGGATGCTGAGCATCATGCGGGCCTGCAGGGACGCCGGCACCGTCAAGCGC 480
************************************************************
consensus_2187#0 ATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTAC 524
consensus_2187#1 ATCGTCTTCACCTCCTCCGCCGGGACCGTCAACATCGAGGAGCGGCAGCGCCCCTCCTAC 540
************************************************************
consensus_2187#0 GACCACGACGACTGGAGCGACATCGACTTCTGCCGCCGCGTCAAGATGACCGGATGGATG 584
consensus_2187#1 GACCACGACGACTGGAGCGACATCGACTTCTGTCGCCGCGTCAAGATGACCGGATGGATG 600
******************************** ***************************
consensus_2187#0 TACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGG 644
consensus_2187#1 TACTTCGTGTCCAAGTCATTGGCGGAGAAGGCCGCCATGGAATACGCGAGGGAGCACGGG 660
************************************************************
consensus_2187#0 CTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATG 704
consensus_2187#1 CTGGACCTCATCAGCGTCATCCCCACGCTCGTCGTCGGGCCCTTCATCAGCAACGGGATG 720
************************************************************
consensus_2187#0 CCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATC 764
consensus_2187#1 CCGCCGAGCCACGTCACCGCGCTGGCGCTGCTCACGGGGAACGAGGCCCACTACTCGATC 780
************************************************************
consensus_2187#0 CTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGACGCCGAGATCTTCCTCTTC 824
consensus_2187#1 CTGAAGCAGGTGCAGTTCGTCCACCTCGACGACCTCTGCGATGCCGAGATCTTCCTCTTC 840
***************************************** ******************
consensus_2187#0 GAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGC 884
consensus_2187#1 GAGAGCCCCGAGGCGCGCGGCCGCTACGTCTGCTCCTCCCACGACGCCACCATCCACGGC 900
************************************************************
consensus_2187#0 CTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGG 944
consensus_2187#1 CTCGCGACGATGCTCGCGGACATGTTCCCGGAGTACGACGTGCCGCGGAGCTTTCCCGGG 960
************************************************************
consensus_2187#0 ATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGG 1004
consensus_2187#1 ATCGACGCCGACCACCTCCAGCCGGTGCACTTCTCGTCGTGGAAGCTCCTCGCCCACGGG 1020
************************************************************
consensus_2187#0 TTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAG 1064
consensus_2187#1 TTCAGGTTCAGGTACACGCTGGAGGACATGTTCGAGGCCGCCGTCCGGACGTGCAGGGAG 1080
************************************************************
consensus_2187#0 AAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGC 1124
consensus_2187#1 AAGGGGCTTCTCCCGCCGCTGCCGCCACCGCCGACGACGGCCGTGGCCGGAGGAGACGGC 1140
************************************************************
consensus_2187#0 TCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTT 1184
consensus_2187#1 TCGGCGGGTGTGGCCGGCGAGAAGGAACCGATACTGGGGAGGGGGACCGGGACGGCGGTT 1200
************************************************************
consensus_2187#0 GGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTAT 1244
consensus_2187#1 GGTGCTGAAACAGAAGCGTTGGTCAAATGAGTGTTGACTAGTGAGTCCAGAGAACGGTAT 1260
************************************************************
consensus_2187#0 TGAAATTGATCGTGTTTCGCTGCTCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGA 1304
consensus_2187#1 TGAAATTGATCGTGTTTCGCTGCGCCTTGCCTCGTTGGCTTCGTCTATTTCACAATGCGA 1320
*********************** ************************************
consensus_2187#0 GATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGAT 1364
consensus_2187#1 GATTTGGAATAAATCAGAGCGGTTAATCCTGTAAGTTCATATGTAACGTACCCATTTGAT 1380
************************************************************
consensus_2187#0 TTTTTATTGGTTACATATGGTTACTCCCTCCGGTTTCATTTTAATTGACACTTTGAACAA 1424
consensus_2187#1 TTTTTATTGGTTACATATGGTTACTCCCAAAAAAAAAAA--------------------- 1419
**************************** *
consensus_2187#0 TAATACGTTTTACAAGATATACCTTTGACTTTAAAAA 1461
consensus_2187#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||