These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAGACCCAAAAAAAAATTGCACCCTTGTTTATTATTACTCACGTCAGATTGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCTGTTCAAGTTTTCTTATGCTTTTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTGCCCTCAAAGTGTGGCAAATGGCGGTTGTTTGCACCAAAACCAGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGTGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGTTGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATACATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCTCATCCCCCTTGTCTCTCCCCT] [+] EMBL CA762266 [TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAGACCCAAAAAAAAATTGCACCCTTGTTTATTATTACTCACGTCAGATTGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCTGTTCAAGTTTTCTTATGCTTTTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTGCCCTCAAAGTGTGGCAAATGGCGGTTGTTTGCACCAAAACCAGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGTGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGTTGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATACATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCTCATCCCCCTTGTCTCTCCCCT] consensusID : consensus_2190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [TTTTTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGATGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTTTCCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATGTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGGCGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGTTGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACCTAGTGAATGGCAAAACAAACCACC] [-] EMBL BQ906200 [TTTTTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGATGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTTTCCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATGTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGGCGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGTTGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACCTAGTGAATGGCAAAACAAACCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2190#0 TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAG 60 consensus_2190#1 ---------------------------------------------------------TTT 3 consensus_2190#0 ACCCAAAAAAAAATTGCACCCTTGTT-TATTATTACTCACGTCAGATTGATGTCTATACA 119 consensus_2190#1 TTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGAT-GATGTCTATACA 62 **************** * * ******************* ************ consensus_2190#0 AGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCT 179 consensus_2190#1 AGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCT 122 ************************************************************ consensus_2190#0 TGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATC-TGTTCAAGTTTTCTTATGCTT 238 consensus_2190#1 TGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTT 182 ************************************** ********************* consensus_2190#0 TTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACG 298 consensus_2190#1 T-CCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACG 241 * ************************ ********************************* consensus_2190#0 TTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTG-CCCTCAAAGTGTGG 357 consensus_2190#1 TTGATCACAAATCCAT-GTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGG 300 **************** *************************** ****** ******* consensus_2190#0 CAAATGGCGGTT-GTTTGCACCAAAACCAGGG-TAATCATTGAGCTCAAACCCCATACTT 415 consensus_2190#1 CGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTT 360 * ********* ********** ******** *************************** consensus_2190#0 CCACTACGGG-TGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGT 474 consensus_2190#1 CCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGT 420 ********** *************** **************************** **** consensus_2190#0 TGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATAC 534 consensus_2190#1 TGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACC-TAGTGAATGGCAAAACAAACCAC 479 *********** ************************ * * ** ** ** ** consensus_2190#0 ATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCT 594 consensus_2190#1 C----------------------------------------------------------- 480 consensus_2190#0 CATCCCCCTTGTCTCTCCCCT 615 consensus_2190#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||