cluster # 2190

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Oryza sativa
cluster # 2190 cluster # 2190 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2190#0 length = 615 sequences # 1

consensus_2190#1 length = 480 sequences # 1

consensusID : consensus_2190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAGACCCAAAAAAAAATTGCACCCTTGTTTATTATTACTCACGTCAGATTGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCTGTTCAAGTTTTCTTATGCTTTTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTGCCCTCAAAGTGTGGCAAATGGCGGTTGTTTGCACCAAAACCAGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGTGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGTTGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATACATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCTCATCCCCCTTGTCTCTCCCCT]

[+] EMBL CA762266             [TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAGACCCAAAAAAAAATTGCACCCTTGTTTATTATTACTCACGTCAGATTGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCTGTTCAAGTTTTCTTATGCTTTTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTGCCCTCAAAGTGTGGCAAATGGCGGTTGTTTGCACCAAAACCAGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGTGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGTTGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATACATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCTCATCCCCCTTGTCTCTCCCCT]




>consensus_2190#0
TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAG
ACCCAAAAAAAAATTGCACCCTTGTTTATTATTACTCACGTCAGATTGATGTCTATACAA
GTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTT
GGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCTGTTCAAGTTTTCTTATGCTTTT
CCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACGTT
GATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTGCCCTCAAAGTGTGGCAA
ATGGCGGTTGTTTGCACCAAAACCAGGGTAATCATTGAGCTCAAACCCCATACTTCCACT
ACGGGTGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGTTGGAGT
TGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATACATGAAT
GAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCTCATCCC
CCTTGTCTCTCCCCT

consensusID : consensus_2190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [TTTTTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGATGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTTTCCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATGTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGGCGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGTTGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACCTAGTGAATGGCAAAACAAACCACC]

[-] EMBL BQ906200             [TTTTTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGATGATGTCTATACAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTTTCCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACGTTGATCACAAATCCATGTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGGCGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTTCCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGTTGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACCTAGTGAATGGCAAAACAAACCACC]




>consensus_2190#1
TTTTTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGATGATGTCTATA
CAAGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAAC
CTTGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGC
TTTCCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAAC
GTTGATCACAAATCCATGTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGG
CGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTT
CCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGT
TGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACCTAGTGAATGGCAAAACAAACCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2190#0      TTTTTTCAGCAAGCCCTTTTTTTTTTTGTGCATGCTTGATAATTTATCCAGCACTCAAAG 60
consensus_2190#1      ---------------------------------------------------------TTT 3
                                                                                  

consensus_2190#0      ACCCAAAAAAAAATTGCACCCTTGTT-TATTATTACTCACGTCAGATTGATGTCTATACA 119
consensus_2190#1      TTTTTTAAAAAAATTGCACCCTGGGTGNATTATTACTCACGTCAGAT-GATGTCTATACA 62
                            **************** * *  ******************* ************

consensus_2190#0      AGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCT 179
consensus_2190#1      AGTTAGGGAGTACTCCCAAATTATTTTCGATCTATAAATGGCATTATGGCACTACAACCT 122
                      ************************************************************

consensus_2190#0      TGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATC-TGTTCAAGTTTTCTTATGCTT 238
consensus_2190#1      TGGCAGTATGGCACTCTTCCTTTGTCATCTCAGTCATCGTGTTCAAGTTTTCTTATGCTT 182
                      ************************************** *********************

consensus_2190#0      TTCCATGCAAGAACATGTGAACTGGAAACTGGAGACTGGAGAGACTGGCAAATTATAACG 298
consensus_2190#1      T-CCATGCAAGAACATGTGAACTGGAGACTGGAGACTGGAGAGACTGGCAAATTATAACG 241
                      * ************************ *********************************

consensus_2190#0      TTGATCACAAATCCATTGTTCAGCTGTTTGTCCCTTCATCTATTG-CCCTCAAAGTGTGG 357
consensus_2190#1      TTGATCACAAATCCAT-GTTCAGCTGTTTGTCCCTTCATCTATTNGCCCTCAGAGTGTGG 300
                      **************** ***************************  ****** *******

consensus_2190#0      CAAATGGCGGTT-GTTTGCACCAAAACCAGGG-TAATCATTGAGCTCAAACCCCATACTT 415
consensus_2190#1      CGAATGGCGGTNTGTTTGCACCAGAACCAGGGGTAATCATTGAGCTCAAACCCCATACTT 360
                      * *********  ********** ******** ***************************

consensus_2190#0      CCACTACGGG-TGAATTCCGATTCTTTAAAATCGATAGCCTCAGTCGTTGCATCAAAGGT 474
consensus_2190#1      CCACTACGGGGTGAATTCCGATTCTTCAAAATCGATAGCCTCAGTCGTTGCATCAGAGGT 420
                      ********** *************** **************************** ****

consensus_2190#0      TGGAGTTGCTTTGCTTTCCTGTAGCACTCTTAGACCATGGGGAGGTTCACTACTTGATAC 534
consensus_2190#1      TGGAGTTGCTTGGCTTTCCTGTAGCACTCTTAGACC-TAGTGAATGGCAAAACAAACCAC 479
                      *********** ************************ * * **    **  **     **

consensus_2190#0      ATGAATGAAACAACACGAAACCAAAAGCACCATGACTATATATGGCAAAGATAAATTCCT 594
consensus_2190#1      C----------------------------------------------------------- 480
                                                                                  

consensus_2190#0      CATCCCCCTTGTCTCTCCCCT 615
consensus_2190#1      ---------------------