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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGGCGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCCGCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCGTTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTCCTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGGGGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGGCGGACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACAAGGCTATATGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACAGTGGGAACTGTTGTACTGGGACCTGACCATTGCCGAGAGGGATCACGATTCTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTC]
[+] EMBL AK062871 [CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGGCGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCCGCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCGTTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTCCTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGGGGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGGCGGACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACAAGGCTATATGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACAGTGGGAACTGTTGTACTGGGACCTGACCATTGCCGAGAGGGATCACGATTCTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTC]
consensusID : consensus_2195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[GGAGCAGCTGGAGGCGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGGCTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGACTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNTCAGATTTCCAGGGCAGGAAAAAAAAAA]
[+] EMBL BQ906106 [GGAGCAGCTGGAGGCGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGGCTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGACTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNTCAGATTTCCAGGGCAGGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2195#0 CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGG 60
consensus_2195#1 ------------------------------------------------------------
consensus_2195#0 CGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCC 120
consensus_2195#1 ------------------------------------------------------------
consensus_2195#0 GCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCG 180
consensus_2195#1 ------------------------------------------------------------
consensus_2195#0 TTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTC 240
consensus_2195#1 ------------------------------------------------------------
consensus_2195#0 CTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGG 300
consensus_2195#1 ------------------------------------------------------------
consensus_2195#0 GGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGG 360
consensus_2195#1 ----------------------------------------------GGAGCAGCTGGAGG 14
**************
consensus_2195#0 CGGACACGGTCACC-GTCGTCGACAC-ATCTGGCGACGGCCGCCATGTCTGCATAGATGT 418
consensus_2195#1 CGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGT 74
************** *********** *********************************
consensus_2195#0 AGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTAC-AAGG 477
consensus_2195#1 AGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGG 134
******************************************************* ****
consensus_2195#0 CTATATGGGAGGAGCTCCAAAGCACC-GTGCATGCTGTGGACCAAATGACGACCAAGACG 536
consensus_2195#1 CTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACG 194
************************** *********************************
consensus_2195#0 CCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCA 596
consensus_2195#1 CCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCA 254
************************************************************
consensus_2195#0 CA--GTGGGAACTGTTGTACTGGGACCTGACCA-TTGCCGAGAGGGATCACGATTCTT-- 651
consensus_2195#1 CCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGA 314
* ***************************** ************************
consensus_2195#0 ---------------TATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGAT 696
consensus_2195#1 CTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGAT 374
*********************************************
consensus_2195#0 TGGCATGGCTTC------------------------------------------------ 708
consensus_2195#1 TGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNT 434
************
consensus_2195#0 ---------------------------
consensus_2195#1 CAGATTTCCAGGGCAGGAAAAAAAAAA 461
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||