These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGGCGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCCGCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCGTTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTCCTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGGGGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGGCGGACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACAAGGCTATATGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACAGTGGGAACTGTTGTACTGGGACCTGACCATTGCCGAGAGGGATCACGATTCTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTC] [+] EMBL AK062871 [CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGGCGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCCGCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCGTTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTCCTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGGGGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGGCGGACACGGTCACCGTCGTCGACACATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACAAGGCTATATGGGAGGAGCTCCAAAGCACCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACAGTGGGAACTGTTGTACTGGGACCTGACCATTGCCGAGAGGGATCACGATTCTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTC] consensusID : consensus_2195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GGAGCAGCTGGAGGCGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGGCTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGACTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNTCAGATTTCCAGGGCAGGAAAAAAAAAA] [+] EMBL BQ906106 [GGAGCAGCTGGAGGCGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGTAGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGGCTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACGCCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCACCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGACTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGATTGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNTCAGATTTCCAGGGCAGGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2195#0 CTTGAGCATCGCAGTATCGCACTCGTGGAATCTCCTCCCGTCCCATCTCCTCTCCACCGG 60 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 CGATGCAGCAGATGAGGTCCGCCGCCGCCGCCCCCTGCTCCCTCGCCGCCATGCTCCTCC 120 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 GCCGCTTCGCCTACACCTCCTACTCCTCCTCCTGTGGGCCCATCCGCCGTCACGCCGCCG 180 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 TTGCCCTCTCCTCCACCACCACCACCACCACCAGGTTCGCCGCCTGGTCCCCTCCTCCTC 240 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 CTTCGGGCGGCGCCAGGAGCAGGGGGTTCGCTGCCTGGGCGTCGGCGCCCGGGCCGGCGG 300 consensus_2195#1 ------------------------------------------------------------ consensus_2195#0 GGTCCACGGATTCCCCCGCCATGCAGGCGCTGGAGACCAAGATCAAGGAGCAGCTGGAGG 360 consensus_2195#1 ----------------------------------------------GGAGCAGCTGGAGG 14 ************** consensus_2195#0 CGGACACGGTCACC-GTCGTCGACAC-ATCTGGCGACGGCCGCCATGTCTGCATAGATGT 418 consensus_2195#1 CGGACACGGTCACCCGTCGTCGACACCATCTGGCGACGGCCGCCATGTCTGCATAGATGT 74 ************** *********** ********************************* consensus_2195#0 AGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTAC-AAGG 477 consensus_2195#1 AGTTTCCAAGGTATTCGAAGGGAAGTCTGCCGTAAATCGGCAGAGAATGGTTTACCAAGG 134 ******************************************************* **** consensus_2195#0 CTATATGGGAGGAGCTCCAAAGCACC-GTGCATGCTGTGGACCAAATGACGACCAAGACG 536 consensus_2195#1 CTATATGGGAGGAGCTCCAAAGCACCCGTGCATGCTGTGGACCAAATGACGACCAAGACG 194 ************************** ********************************* consensus_2195#0 CCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCA 596 consensus_2195#1 CCTTCTGAGGCTGCTGCCAACCAGTAGCAAGCATCTGCTTGAGATAAATTTGGAGTGCCA 254 ************************************************************ consensus_2195#0 CA--GTGGGAACTGTTGTACTGGGACCTGACCA-TTGCCGAGAGGGATCACGATTCTT-- 651 consensus_2195#1 CCACGTGGGAACTGTTGTACTGGGACCTGACCACTTGCCGAGAGGGATCACGATTCTTGA 314 * ***************************** ************************ consensus_2195#0 ---------------TATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGAT 696 consensus_2195#1 CTTTCTAGAATACTTTATATGTACACAACTGAATGGTTAATATTTTTTTTTTGATACGAT 374 ********************************************* consensus_2195#0 TGGCATGGCTTC------------------------------------------------ 708 consensus_2195#1 TGGCATGGCTTCAAGCGTTCAACAGAAATATATTCTATGGTAGTCTTAGGATTTACCCNT 434 ************ consensus_2195#0 --------------------------- consensus_2195#1 CAGATTTCCAGGGCAGGAAAAAAAAAA 461 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||