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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1779 fasta sequence
[TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT]
[+] EMBL AK108671 [TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTCCTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGGACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGGGTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCTCAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGACGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGCTGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCGTCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATCTTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTCAACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGCAAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTCGTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAGACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTCAAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATCGTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTGTGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCGTCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGAGAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCTCAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAAGACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATACTGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAGAAAT]
consensusID : consensus_2202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence
[TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA]
[+] EMBL BQ172816 [TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGGCCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGCCTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTACATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAATGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTTAGAATCGAGTTGTTTTTTACAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2202#0 TCCGCCACTCCTCCCCCTCTCTTTTGCTACCTCCTTGCCTCCGCCGACCCTCCCCCTCTC 60
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 CTCCACCTCCCTTCCCCTGTCTTCCGTCGCCCCTTCTCCTCTCCTCCTCTCTGCTCGGGG 120
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 ACGGCCAGATCCGCCGCCGCGTGCTTAGGGACAGCCAGATCCGCCGCCGCACGCTCGGGG 180
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 GTATCCGGATCCGCCACCACAAGCACGGGGCAGCCCATTTAACGACTACTGTGGCTCCCT 240
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 CAACTCCCTCAACCACCGTGTGCTTGGGGGCGGCCGAATCTACCACCGTGCACACGAGGA 300
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 CGGCCTACTCACAACAGCGGCTTCCTCAACTCCCTCAATCGCCACAGGCACAGGGGTGGC 360
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 TGCTCAACGACGACGGGTCATCGATCATCATTGGACACCAATTAAGCAACAGCAATGGCG 420
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 TCGAGGAGCATATCAAGCTGCACAACTGAGACGGCAAAAGGCATCCACAGGTTCGAGATC 480
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 TTCAGTTACAGCATGATGAACACCGAAGCCGAAGACGACTCCATCCGGTCCGGCGTCTTC 540
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 AACGTAGGAGGATTCGATTGGGCGTTGCTTTACTACCCTGACGGCATCGACGACGACAGC 600
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 AAGGGCTACATCGGCGTCTACCTCGAGCTGATCAGCAAGAACGGCGAGCCATGGGCACTC 660
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 GTCGACGTGAATCTGATCAACCAGCTGCAACCCGGGCAACCTCGTCAGCTGTTCACCAAG 720
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 ACCGATGTGCCTACCCCGTTCAGATCTTCAAGCTTTCAGGAGTCTACCTTGGGGTCTCTC 780
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 AAGTGCATGAAGAGGAGCGATATTGAGAGCACTCCAGGGTTCATCGTCAATGACTGCATC 840
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 GTGATCGAATGCAATGTTACTGTCATCTATGAGCCAAAAGTGTCTAAAACCAGGGCATTG 900
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 TGTGACGCTGAAACTAGTTCGGCATTGCGCGAGATCGAGGTGCCTCCTATGGAGATATCG 960
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 TCGGATTTCGCCAAGATGTTGAAGGACGGTGTAGGAGCAGATGTGACATTCAGAGTTGGA 1020
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 GAAGACACATTCCGTGCCCACAGGGCGGTGCTAGCTGCGAGGTCTCCAGTATTTCATGCT 1080
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 CAGCTCTGTGGACCGATGAAGGAGAAGAAGGAGACACAAATGCAGGAGATAACCATCCAA 1140
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 GACATGCAGCCATCTGTCTTCGAGGCTTTCCTCTATTTCATCTACACCGATTGTGTTCCA 1200
consensus_2202#1 ------------------------------------------------------------
consensus_2202#0 AGAATGGATGATCTTGGCAATGGTGAGAAG--ATGCATTTGATGATGCATTTGCTTAAGG 1258
consensus_2202#1 ------------TTGGGCAATGGTGAGCAAGCATGCATCTGATGATGCATTTGCTTAAGG 48
* ************ * ****** *********************
consensus_2202#0 CCGGTGACCGGTATGGATTGGAG-AGGCTCAGG--ATCATGTGCGAGAG--ATTTCTAGC 1313
consensus_2202#1 CCGGTGACCGGTATGGATTGGAGCAGGCTCACGCGATCATGTGCGNACAGCATCCCTAGC 108
*********************** ******* * ********** ** *****
consensus_2202#0 -TACG-AACCTCG-ACACGG-AGCATGTATCTGCG-ATACTGGGTCTAGCTGACTTGCTA 1368
consensus_2202#1 CTACGCAACCTCGCACACGGGAGCATGTATCTGCGCATACTGGGTCTAGCTGACTTGCTA 168
**** ******* ****** ************** ************************
consensus_2202#0 GATCTCAAG---AAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGA--GAA 1423
consensus_2202#1 CATCTCACACGCAAGCTCAAGGAAGCTTGCATGGAGTTCATGGTCCCATCTGACGACGAA 228
****** ******************* ********************* ***
consensus_2202#0 TGGATGCCGTGGCTGCAAGTCAAGGGTACCA-GCA-GCTGAAGAGAGCATTTCCCTCTCT 1481
consensus_2202#1 TGGATGCCGTGGCTGCAAGTCAAGGGTACCACGCACGCTGAAGAGAGCATTTCCCTCTCT 288
******************************* *** ************************
consensus_2202#0 GGCGTTTGA-AGTGTGGGAGA---GGAGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 1537
consensus_2202#1 GGCGTTTGACAGTGTGGGACGACGGACGGAGCCGTGTTCGCAGGAATTAATTAACATCTT 348
********* ********* * *********************************
consensus_2202#0 CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 1597
consensus_2202#1 CTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTTATGTTTGTT 408
************************************************************
consensus_2202#0 TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 1657
consensus_2202#1 TTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCA 468
************************************************************
consensus_2202#0 CGCG-TGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTT 1716
consensus_2202#1 CGCGCTGGTTGCACCTTAATGTAATGTGGCTATCTGGATCATGCCAATGGTTTTACCTTT 528
**** *************************************** ***************
consensus_2202#0 AGA-TCGAGTTGTTTTTTAAACCTTACTCTCTTACCAACTCTCTTAAGTTTTTATGCTAG 1775
consensus_2202#1 AGAATCGAGTTGTTTTTTACAAAAAAAAAAAA---------------------------- 560
*** *************** * *
consensus_2202#0 AAAT 1779
consensus_2202#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||