cluster # 2206

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Oryza sativa
cluster # 2206 cluster # 2206 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2206#0 length = 779 sequences # 1

consensus_2206#1 length = 549 sequences # 1

consensusID : consensus_2206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [TCTCTTGACCTCACGAATCCCCTTTGCCGCGAGCAACCCGCGACCTCCCTCCCTCCGCGGCCACACGAGGATTCTACCTTTTCTTCCGCAGCTGTCTATCTACCGCCATGGAGCACTGAAGCCCCAAGCATCCAAATCACATTGAAATCCTTCCATTTAGATCACCTGTAGATATTTGCATCATCTGGACTCAAGACTCCATTCCATTTTGCAGTGGCCTTTTGCTTTCAACTCAATCTCAAGAGTGTAATTAACTTGGAAATAAAGACAGGTGACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGCAGAAGAGCCCNCAATCAAATCCAGCTGACGCGGGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTGCACCCAACCACCTCCCCTTCCCCTCCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAGCAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAGACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGCTAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCTCCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAGCGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG]

[+] EMBL AW154962             [TCTCTTGACCTCACGAATCCCCTTTGCCGCGAGCAACCCGCGACCTCCCTCCCTCCGCGGCCACACGAGGATTCTACCTTTTCTTCCGCAGCTGTCTATCTACCGCCATGGAGCACTGAAGCCCCAAGCATCCAAATCACATTGAAATCCTTCCATTTAGATCACCTGTAGATATTTGCATCATCTGGACTCAAGACTCCATTCCATTTTGCAGTGGCCTTTTGCTTTCAACTCAATCTCAAGAGTGTAATTAACTTGGAAATAAAGACAGGTGACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGCAGAAGAGCCCNCAATCAAATCCAGCTGACGCGGGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTGCACCCAACCACCTCCCCTTCCCCTCCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAGCAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAGACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGCTAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCTCCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAGCGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG]




>consensus_2206#0
TCTCTTGACCTCACGAATCCCCTTTGCCGCGAGCAACCCGCGACCTCCCTCCCTCCGCGG
CCACACGAGGATTCTACCTTTTCTTCCGCAGCTGTCTATCTACCGCCATGGAGCACTGAA
GCCCCAAGCATCCAAATCACATTGAAATCCTTCCATTTAGATCACCTGTAGATATTTGCA
TCATCTGGACTCAAGACTCCATTCCATTTTGCAGTGGCCTTTTGCTTTCAACTCAATCTC
AAGAGTGTAATTAACTTGGAAATAAAGACAGGTGACTTATTGTGAAACCAGCANGTGGAG
GAAGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGCAGAAGAGCCCNCAATCA
AATCCAGCTGACGCGGGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTGCACC
CAACCACCTCCCCTTCCCCTCCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTA
TCATCATCACCCCCACCGAGCAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAAT
CTGTCTGCAGATACGCGCAGACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACG
CNAGCAGGAACTTACTGCGCTAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCC
CCGGAAGGCTTCAGTTTTCTCCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCG
TTACGGCCCCTCCCCCAGAGCGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG

consensusID : consensus_2206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTCGTAAAAAACTTTCTATATATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGTATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCGTGTCCACACCCCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCTTCCTATTTCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTACTATTTCATTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCGTTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCCCCCCTTGTCTCGTC]

[-] EMBL CA764940             [GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTCGTAAAAAACTTTCTATATATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGTATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCGTGTCCACACCCCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCTTCCTATTTCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTACTATTTCATTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCGTTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATACAGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCATCAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCCCCCCTTGTCTCGTC]




>consensus_2206#1
GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTC
GTAAAAAACTTTCTATATATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGTA
TAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCGTGTCCACACCCCA
TCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCTTCC
TATTTCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTACTATTTCATTTCT
GTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCGTTTGT
ATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATACAGCAG
AGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCATCAATT
AATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCCCCCCT
TGTCTCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2206#0      ------------------------------------------------------------
consensus_2206#1      GATACATATTTTTATCTTAATTTTAATTCGAGTACTCCTAGCTGCTAGACAGTATATTTC 60
                                                                                  

consensus_2206#0      -------TCTCTTGACCTCACGAATCCCCTTTG--CCGCGAGCAACCCGCGACCTCCCTC 51
consensus_2206#1      GTAAAAAACTTTCTATAT-ATAAGTTACTTTAAAATATCAACTAAATCAAAATTTCAAGT 119
                              ** *  *  * *  * *  * **       * *  **  *   *  **    

consensus_2206#0      CCTCCGCGGCCACACGAGGATT---------CTACCTTTTCTTCCGCAGCTGTCTATCTA 102
consensus_2206#1      ATAAAATAATTAAAACATAATTAATTGTATGCTAATATATTTTTTTCG--TGTCCACACC 177
                                 * *  *  ***         ***   * * **   *   **** *    

consensus_2206#0      CCGCCATGGAGCACTGAAGCCCCAAGCA---TCCAAATCACA---TTGAAATCCTTCCAT 156
consensus_2206#1      CCATCTTTATATGCTATTTTCTCGAACGGGGCCTTAATAAGAAACTTAGAAACTTGCTCT 237
                      **  * *      **     * * * *     *  *** * *   **  ** * * *  *

consensus_2206#0      TTAGATCACCTGTAGATATTTGCATCATCTGGACTC---AAGACTCCATTCCATTTTGCA 213
consensus_2206#1      TCCTATT-TCTGCTAAAATTTGTACTGTTTGTTCCTTTGAGAAATCCATTAC-TATTTCA 295
                      *   **   ***   * ***** *   * **  *     *  * ****** * * ** **

consensus_2206#0      GTGGCCTTTTGCTTTCAACTCAA---TCTCAAGAGTGTAATTAACTTGGAAATAAAGACA 270
consensus_2206#1      TTTCTGTAGAACATCCAGACAAGAGGTTACTGAAATGTAGCATAACGAATCTTCAATCCG 355
                       *    *    * * **    *    *  *   * ****    *        * **  * 

consensus_2206#0      GGTG---ACTTATTGTGAAACCAGCANGTGGAGGAAGTGGCTGCCGCTTGTTTCCAATAC 327
consensus_2206#1      TTTGTATATGTGCAGTGAAACCAGCAGGTGGAGGAGGTGGCTGCCGCTTGTTTCCAATAC 415
                        **   *  *   ************ ******** ************************

consensus_2206#0      AGCAGAGAGAGAGAG----CAGAAGAGCCCNCAATCAAATCCAGCTGACGCGG-GTCCAT 382
consensus_2206#1      AGCAGAGAGAGAGAGAGAGCAGAAGAGCCCCCAATCAAATCCAGCTGACGCGGTGTCCAT 475
                      ***************    *********** ********************** ******

consensus_2206#0      CAATTAATAACAGAAAGAAGAAGAGGATCCGGTG--CACCCAACCACCTCCCCTTCCCCT 440
consensus_2206#1      CAATTAATAACAGAAAGAAGAAGAGGATCCGGTTGCCACCCAACCACCTCCCCCCTCCCC 535
                      *********************************   *****************   *** 

consensus_2206#0      CCTTGTTATATAACCCGACCGACNCTGGCGCCAGCATGTATCATCATCACCCCCACCGAG 500
consensus_2206#1      CCCC-TTGTCTCGTC--------------------------------------------- 549
                      **   ** * *   *                                             

consensus_2206#0      CAGCAGCCACATCTTCGCCGCGCACGCCACGCCCAGGAATCTGTCTGCAGATACGCGCAG 560
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      ACACCGCATGCCGCGCGGTCCGAACGAAATCTGTGGCACGCNAGCAGGAACTTACTGCGC 620
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      TAACACCGCCGATACGATCCTTACCCGTGGTAAAAACCCCCCGGAAGGCTTCAGTTTTCT 680
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      CCCACTAAGGATTATGTCCTTAAGCCCCCACCCCAGAGCGTTACGGCCCCTCCCCCAGAG 740
consensus_2206#1      ------------------------------------------------------------
                                                                                  

consensus_2206#0      CGGCGGGGATTAATTATATTATGCCTGAAAGAACCGTTG 779
consensus_2206#1      ---------------------------------------