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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1014 fasta sequence
[CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGCGAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCTACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCCGGGGGAGCACAAGTCTGGACATGCAAGAAGAACGACGGCAAGAGGTGGCACTGCCAGCGGCGGGTGAGGCAGCCCAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCGGCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCACCGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGGCGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCCCGTTCCGCACCA]
[+] EMBL AK069924 [CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGCGAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCTACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCCGGGGGAGCACAAGTCTGGACATGCAAGAAGAACGACGGCAAGAGGTGGCACTGCCAGCGGCGGGTGAGGCAGCCCAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCGGCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCACCGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGGCGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCCCGTTCCGCACCA]
consensusID : consensus_2209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence
[ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGGGAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGCGACGGCGAAGAGAAAGAGGNGCAACCGCNGCTGTGATGAGGGGACGACCTACCAGATACATGCTCAGAAAGAGAGGTGACTCCATCGCATNNTCGCGCGGGACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACACATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATTTCCCGGCCCTTAGGGGGGATGGTACAATCCTTCTAAGGAGAAGGGGGTGATGAGATGTTGACCAGGCA]
[+] EMBL AW155047 [ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAAATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTCGCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTCCTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGGGCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCGTACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCCGGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCCGATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGCTGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGGGAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCACCGCGACGGCGAAGAGAAAGAGGNGCAACCGCNGCTGTGATGAGGGGACGACCTACCAGATACATGCTCAGAAAGAGAGGTGACTCCATCGCATNNTCGCGCGGGACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACACATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATTTCCCGGCCCTTAGGGGGGATGGTACAATCCTTCTAAGGAGAAGGGGGTGATGAGATGTTGACCAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2209#0 ----------CTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAA 50
consensus_2209#1 ACACCCATCTCTCCTCTCCACCTCCACCTCTCTCTCCTCGCATTCGTGCTCGCCTCCCAA 60
**************************************************
consensus_2209#0 ATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTC 110
consensus_2209#1 ATCCCAAACCCTAGCGGGGGGAGGGGAAGCCCGCGCGCGCCGCCGCAGATCCCATCCCTC 120
************************************************************
consensus_2209#0 GCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTC 170
consensus_2209#1 GCGCCGCGGCGGCCCAATCGCGCGGCGGCCATGCGGATCCGCAAGTGCGCGTCCCGCCTC 180
************************************************************
consensus_2209#0 CTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGG 230
consensus_2209#1 CTCGGCTCCTCCTACTCCGCCTCCGCCGCGGCGCCCCCGCCGCCCGTGACGGGGGCGGGG 240
************************************************************
consensus_2209#0 GCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCG 290
consensus_2209#1 GCGGCGGCGCCAGGATTCGAGCTCCTCCCGCTCGCGCTGGCGACGCCGCCGCCGCTCCCG 300
************************************************************
consensus_2209#0 TACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCC 350
consensus_2209#1 TACCCGGGGAGCCACGAATCCGGCGCGGGGGCCACCTGCTTCGCCGCCGCGGCTGCCTCC 360
************************************************************
consensus_2209#0 GGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCC 410
consensus_2209#1 GGGGAGCCCTGCGAGCTCAGCCGCTCGCCATGGGACCTTATCGGCGAGCTCAACATCTCC 420
************************************************************
consensus_2209#0 GATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGC 470
consensus_2209#1 GATCCCCAGGAGGAGGACGTCGTGGAGAAGTACTTCGTCCATGTCGCCAGCCGGGCTAGC 480
************************************************************
consensus_2209#0 TGGCTCTTCCCGACCAGCATGCCCGCCGCCGTCAAGCAGAAGGGGCTAGCTGCGGCCGGC 530
consensus_2209#1 TGGCTCTTCCCGACCAGCATGCCCGCCGNCGTCAAGCAGAAGGGGCTAGCTGCNNGCCGG 540
**************************** ************************ * *
consensus_2209#0 GAGTTCAGCACCAAGATACCTAATAAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCA 590
consensus_2209#1 GAGTTCAGCACCAAGATACCTANNTAGAAGTTCGCCAAGAAGACGGCGAAGAAGCCGTCA 600
********************** ***********************************
consensus_2209#0 CCGGCGACGGCGAAGAAGAAAGAGGCGGCAGCGGCGGCGGTGAAGGAGGAGGACGAACCT 650
consensus_2209#1 CCG-CGACGGCGAAGA-GAAAGAGGNG-CAACCGCNGCTGTGATGAGG--GGACGA-CCT 654
*** ************ ******** * ** * ** ** **** * * ****** ***
consensus_2209#0 ACCAAGAAACCAAAGCTCAAGAAAGAAGAGGATGACTCCAATTCCGCCATCTCCGCCGCC 710
consensus_2209#1 ACCA-GATAC--ATGCTCAGAAAGAGA---GGTGACTCCA---TCGC-ATNNTCGCGCGG 704
**** ** ** * ***** ** * * ******** *** ** ***
consensus_2209#0 GGGGGAGCACAAGTCTGG--ACATGCAAGAAGAACGACGGCAAGAG--GTGGCACTGCCA 766
consensus_2209#1 GACACAGTCTGACTGCGAGAACACGCAAAGTGCCTGCGCGCGTGAGCAGCATCCTTGACA 764
* ** * * * *** **** * * ** *** * * ** **
consensus_2209#0 G--CGGCGGGTGAGGCAGCC--CAACTCCCTCTGCGACTACCACTCCGACCAGAAGCGCG 822
consensus_2209#1 CATTGACGAGCGGTGTATACTTCTGATCACACTAAAAAGATT-TCCCGGCCCTTAGGGGG 823
* ** * * * * * * ** * ** * * *** ** ** * *
consensus_2209#0 GCTACTACAACCCGCTGTACGACGACCCCACCGACGAGACGTATGCTCCACCGGCGTCAC 882
consensus_2209#1 GATGGTACAATCC-TTCTAAGGAGAAGGGGGTGATGAGATGT-TGACCAGGCA------- 874
* * ***** ** * ** * ** ** **** ** ** * *
consensus_2209#0 CGCCGTCATCGGTGGTGCCGGCGACCGCGTCCTCCAAGACCTCCACCAGCTCCTCCAAGG 942
consensus_2209#1 ------------------------------------------------------------
consensus_2209#0 CGCGGAAGAAGAAGGTGGCGGATTCCGGCGAGGGGTTCTACTACTACGCAGGGTTCGGCC 1002
consensus_2209#1 ------------------------------------------------------------
consensus_2209#0 CGTTCCGCACCA 1014
consensus_2209#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||